Sequence Similarity Clusters for the Entities in PDB 4J01

Entity #1 | Chains: A,B,E,F
Transcription Factor HetR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 4713
95 % 5 5 5434 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 3.0
PDBFlex
90 % 5 5 5451
70 % 7 7 3909
50 % 7 7 3797
40 % 7 7 3633
30 % 7 7 3388
Entity #2 | Chains: C,D,G,H
DNA (29-MER) dna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.