Sequence Similarity Clusters for the Entities in PDB 4J01

Entity #1 | Chains: A,B,E,F
Transcription Factor HetR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 4141
95 % 5 5 4834
90 % 5 5 4859
70 % 7 7 3510
50 % 7 7 3406
40 % 7 7 3282
30 % 7 7 3068
Entity #2 | Chains: C,D,G,H
DNA (29-MER) dna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.