Sequence Similarity Clusters for the Entities in PDB 4J00

Entity #1 | Chains: A,B
Transcription Factor HetR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 6219
95 % 2 5 6371 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 3.0
PDBFlex
90 % 2 5 6362
70 % 2 7 4379
50 % 2 7 4216
40 % 2 7 3986
30 % 2 7 3523
Entity #2 | Chains: C,D
DNA (5'-D(*TP*GP*GP*TP*GP*AP*GP*GP*GP*GP*TP*TP*AP*AP*AP*CP*CP*CP*CP*TP*CP*AP*CP*C)-3') dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures