Sequence Similarity Clusters for the Entities in PDB 4J00

Entity #1 | Chains: A,B
Transcription Factor HetR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 4897
95 % 2 5 5631 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 3.0
PDBFlex
90 % 2 5 5648
70 % 2 7 4032
50 % 2 7 3899
40 % 2 7 3729
30 % 2 7 3480
Entity #2 | Chains: C,D
DNA (5'-D(*TP*GP*GP*TP*GP*AP*GP*GP*GP*GP*TP*TP*AP*AP*AP*CP*CP*CP*CP*TP*CP*AP*CP*C)-3') dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.