Sequence Similarity Clusters for the Entities in PDB 4IZJ

Entity #1 | Chains: A,E
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16040
95 % 3 5 10931 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 3 5 10788
70 % 5 7 3701
50 % 5 7 3602
40 % 5 7 3468
30 % 5 7 3244
Entity #2 | Chains: B,C
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16040
95 % 4 5 10931 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 4 5 10788
70 % 6 7 3701
50 % 6 7 3602
40 % 6 7 3468
30 % 6 7 3244
Entity #3 | Chains: D
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16040
95 % 5 5 10931 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 5 5 10788
70 % 7 7 3701
50 % 7 7 3602
40 % 7 7 3468
30 % 7 7 3244

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures