Sequence Similarity Clusters for the Entities in PDB 4IZJ

Entity #1 | Chains: A,E
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 12324
95 % 3 5 11875 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 3 5 11689
70 % 5 7 4000
50 % 5 7 3857
40 % 5 7 3674
30 % 5 7 3356
Entity #2 | Chains: B,C
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 12324
95 % 4 5 11875 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 4 5 11689
70 % 6 7 4000
50 % 6 7 3857
40 % 6 7 3674
30 % 6 7 3356
Entity #3 | Chains: D
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 12324
95 % 5 5 11875 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 5 5 11689
70 % 7 7 4000
50 % 7 7 3857
40 % 7 7 3674
30 % 7 7 3356

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures