Sequence Similarity Clusters for the Entities in PDB 4IZJ

Entity #1 | Chains: A,E
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15384
95 % 3 5 10521 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 3 5 10381
70 % 5 7 3553
50 % 5 7 3462
40 % 5 7 3349
30 % 5 7 3127
Entity #2 | Chains: B,C
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15384
95 % 4 5 10521 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 4 5 10381
70 % 6 7 3553
50 % 6 7 3462
40 % 6 7 3349
30 % 6 7 3127
Entity #3 | Chains: D
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15384
95 % 5 5 10521 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 5 5 10381
70 % 7 7 3553
50 % 7 7 3462
40 % 7 7 3349
30 % 7 7 3127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.