Sequence Similarity Clusters for the Entities in PDB 4IZJ

Entity #1 | Chains: A,E
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11723
95 % 3 5 11311 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 3 5 11158
70 % 5 7 3811
50 % 5 7 3704
40 % 5 7 3525
30 % 5 7 3231
Entity #2 | Chains: B,C
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 11723
95 % 4 5 11311 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 4 5 11158
70 % 6 7 3811
50 % 6 7 3704
40 % 6 7 3525
30 % 6 7 3231
Entity #3 | Chains: D
Yellowtail Ascites Virus (YAV) VP4 protease protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 11723
95 % 5 5 11311 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 5 5 11158
70 % 7 7 3811
50 % 7 7 3704
40 % 7 7 3525
30 % 7 7 3231

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures