Sequence Similarity Clusters for the Entities in PDB 4IUM

Entity #1 | Chains: A
papain-like protease 2 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65607
95 % 1 1 45256
90 % 1 1 42936
70 % 1 1 37722
50 % 1 1 32113
40 % 1 1 28349
30 % 1 1 24043
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 318 4
95 % 21 391 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 24 418 6
70 % 24 441 8
50 % 24 462 11
40 % 24 486 16
30 % 74 1038 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.