Sequence Similarity Clusters for the Entities in PDB 4IQJ

Entity #1 | Chains: E,G,K
DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*A)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H,J,L
DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*GP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*CP*G)-3') dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I
DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DOC))-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B,C,D
DNA polymerase III subunit alpha protein, length: 1220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16025
95 % 2 4 11360 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 4.7
PDBFlex
90 % 2 4 11219
70 % 2 4 10735
50 % 2 4 9885
40 % 2 4 9378
30 % 2 7 6344
Entity #5 | Chains: M,N,O,P
C-terminal domain of the DNA polymerase III subunit tau protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28552
95 % 1 1 22868 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.2
PDBFlex
90 % 1 1 22182
70 % 1 1 21600
50 % 1 1 19106
40 % 1 1 16550
30 % 1 1 14904

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures