Sequence Similarity Clusters for the Entities in PDB 4INU

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 252 14
95 % 237 252 25 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 237 252 26
70 % 237 252 34
50 % 252 281 44
40 % 1013 1144 3
30 % 1766 1989 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 236 251 17
95 % 236 251 31 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 236 251 32
70 % 236 251 39
50 % 236 251 76
40 % 251 280 58
30 % 251 280 75
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 133 134 82
95 % 196 199 57 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 196 199 62
70 % 246 253 27
50 % 246 254 67
40 % 246 254 87
30 % 520 557 13
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 204 219 25
95 % 237 252 26 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 237 252 27
70 % 237 252 35
50 % 237 252 74
40 % 252 280 57
30 % 252 281 71
Entity #13 | Chains: M,a
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 252 9
95 % 237 252 19 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 237 252 21
70 % 237 252 29
50 % 237 252 73
40 % 252 270 63
30 % 252 270 80
Entity #14 | Chains: N,b
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 252 15
95 % 237 252 28 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 237 252 29
70 % 237 252 37
50 % 252 270 51
40 % 252 270 64
30 % 521 557 13
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 252 11
95 % 237 252 22 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 237 252 23
70 % 237 252 31
50 % 252 281 43
40 % 1014 1144 3
30 % 1767 1989 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 252 12
95 % 237 252 23 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 237 252 24
70 % 237 252 32
50 % 252 281 46
40 % 1015 1144 3
30 % 1768 1989 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 236 252 10
95 % 236 252 20 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.2
PDBFlex
90 % 237 253 20
70 % 237 253 28
50 % 252 282 41
40 % 1016 1144 3
30 % 1769 1989 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 235 250 18
95 % 237 252 27 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 237 252 28
70 % 237 252 36
50 % 252 281 45
40 % 252 281 56
30 % 1770 1989 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 202 216 26
95 % 202 216 36 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 202 216 40
70 % 202 216 49
50 % 202 216 88
40 % 202 216 108
30 % 1771 1989 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 252 13
95 % 237 252 24 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 237 252 25
70 % 237 252 33
50 % 252 280 47
40 % 252 281 54
30 % 1772 1989 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 214 217 24
95 % 237 252 21 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 237 252 22
70 % 237 252 30
50 % 252 281 42
40 % 252 281 53
30 % 252 281 70
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 252 16
95 % 237 252 29 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 237 252 30
70 % 237 252 38
50 % 252 280 48
40 % 252 281 55
30 % 252 281 72

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.