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An Information Portal to 110071 Biological Macromolecular Structures

Yeast 20S proteasome in complex with the vinyl sulfone LU112
Sequence Clustering and Redundancy Reduction Results
4INU
Sequence Clusters for the Sequence Entities in PDB 4INU
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 167 20
95% 161 167 33
90% 161 167 37
70% 161 167 47
50% 166 174 72
40% 669 713 4
30% 1164 1235 4
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 166 25
95% 160 166 39
90% 160 166 44
70% 160 166 54
50% 160 166 89
40% 165 173 98
30% 165 173 115
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 110 72
95% 157 160 54
90% 157 160 60
70% 157 160 69
50% 162 167 81
40% 162 167 103
30% 344 365 17
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 167 21
95% 161 167 34
90% 161 167 38
70% 161 167 48
50% 161 167 88
40% 166 174 92
30% 166 174 109
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 167 15
95% 161 167 28
90% 161 167 33
70% 161 167 43
50% 161 167 87
40% 166 174 89
30% 166 174 108
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 167 22
95% 161 167 36
90% 161 167 40
70% 161 167 50
50% 166 174 73
40% 166 174 93
30% 345 365 17
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 167 17
95% 161 167 30
90% 161 167 34
70% 161 167 44
50% 166 174 69
40% 670 713 4
30% 1165 1235 4
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 167 18
95% 161 167 31
90% 161 167 35
70% 161 167 45
50% 166 174 70
40% 671 713 4
30% 1166 1235 4
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 167 16
95% 160 167 29
90% 161 168 30
70% 161 168 42
50% 166 175 66
40% 672 713 4
30% 1167 1235 4
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 165 29
95% 161 167 35
90% 161 167 39
70% 161 167 49
50% 166 174 68
40% 166 174 90
30% 1168 1235 4
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 131 52
95% 126 131 69
90% 126 131 72
70% 126 131 85
50% 126 131 122
40% 126 131 143
30% 1169 1235 4
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 167 19
95% 161 167 32
90% 161 167 36
70% 161 167 46
50% 166 174 71
40% 166 174 91
30% 1170 1235 4
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 145 43
95% 157 160 53
90% 157 160 59
70% 157 160 68
50% 162 167 80
40% 162 167 102
30% 162 167 121
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 167 23
95% 161 167 37
90% 161 167 41
70% 161 167 51
50% 166 174 74
40% 166 174 94
30% 166 174 110
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.