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Yeast 20S proteasome in complex with the vinyl sulfone LU112
Sequence Clustering and Redundancy Reduction Results
4INU
Sequence Clusters for the Sequence Entities in PDB 4INU
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 125 42
95% 119 125 62
90% 119 125 65
70% 119 125 79
50% 124 132 106
40% 501 545 6
30% 870 941 5
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 124 46
95% 118 124 68
90% 118 124 71
70% 118 124 86
50% 118 124 127
40% 123 131 134
30% 123 131 152
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 68 114
95% 115 118 77
90% 115 118 80
70% 115 118 97
50% 120 125 116
40% 120 125 141
30% 260 281 19
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 125 43
95% 119 125 63
90% 119 125 66
70% 119 125 80
50% 119 125 123
40% 124 132 129
30% 124 132 149
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 125 37
95% 119 125 57
90% 119 125 61
70% 119 125 75
50% 119 125 122
40% 124 132 126
30% 124 132 148
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 125 44
95% 119 125 65
90% 119 125 68
70% 119 125 82
50% 124 132 107
40% 124 132 130
30% 261 281 19
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 125 39
95% 119 125 59
90% 119 125 62
70% 119 125 76
50% 124 132 103
40% 502 545 6
30% 871 941 5
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 125 40
95% 119 125 60
90% 119 125 63
70% 119 125 77
50% 124 132 104
40% 503 545 6
30% 872 941 5
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 125 38
95% 118 125 58
90% 119 126 60
70% 119 126 74
50% 124 133 101
40% 504 545 6
30% 873 941 5
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 123 47
95% 119 125 64
90% 119 125 67
70% 119 125 81
50% 124 132 102
40% 124 132 127
30% 874 941 5
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 89 81
95% 84 89 130
90% 84 89 140
70% 84 89 157
50% 84 89 194
40% 84 89 216
30% 875 941 5
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 125 41
95% 119 125 61
90% 119 125 64
70% 119 125 78
50% 124 132 105
40% 124 132 128
30% 876 941 5
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 118 49
95% 115 118 76
90% 115 118 79
70% 115 118 96
50% 120 125 115
40% 120 125 140
30% 120 125 158
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 125 45
95% 119 125 66
90% 119 125 69
70% 119 125 83
50% 124 132 108
40% 124 132 131
30% 124 132 150
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.