POP-OUT | CLOSE
 
Yeast 20S proteasome in complex with the vinyl sulfone LU112
Sequence Clustering and Redundancy Reduction Results
4INU
Sequence Clusters for the Sequence Entities in PDB 4INU
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 88
95% 66 72 139
90% 66 72 153
70% 66 72 179
50% 69 77 186
40% 281 324 11
30% 485 555 8
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 93
95% 66 72 145
90% 66 72 159
70% 66 72 185
50% 66 72 224
40% 69 77 225
30% 69 77 236
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 60 127
95% 63 66 162
90% 63 66 174
70% 63 66 204
50% 66 71 207
40% 66 71 240
30% 151 171 31
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 89
95% 66 72 140
90% 66 72 154
70% 66 72 180
50% 66 72 222
40% 69 77 222
30% 69 77 234
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 83
95% 66 72 134
90% 66 72 149
70% 66 72 175
50% 66 72 221
40% 69 77 220
30% 69 77 233
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 91
95% 66 72 143
90% 66 72 157
70% 66 72 183
50% 69 77 187
40% 69 77 223
30% 152 171 31
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 85
95% 66 72 136
90% 66 72 150
70% 66 72 176
50% 69 77 183
40% 282 324 11
30% 486 555 8
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 86
95% 66 72 137
90% 66 72 151
70% 66 72 177
50% 69 77 184
40% 283 324 11
30% 487 555 8
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 72 84
95% 65 72 135
90% 66 73 141
70% 66 73 166
50% 69 78 179
40% 284 324 11
30% 488 555 8
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 70 100
95% 66 72 142
90% 66 72 156
70% 66 72 182
50% 66 72 223
40% 66 72 252
30% 489 555 8
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 35 333
95% 30 35 469
90% 30 35 491
70% 30 35 527
50% 30 35 573
40% 30 35 604
30% 490 555 8
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 87
95% 66 72 138
90% 66 72 152
70% 66 72 178
50% 69 77 185
40% 69 77 221
30% 491 555 8
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 66 110
95% 63 66 161
90% 63 66 173
70% 63 66 203
50% 66 71 206
40% 66 71 239
30% 66 71 258
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 72 92
95% 66 72 144
90% 66 72 158
70% 66 72 184
50% 69 77 188
40% 69 77 224
30% 69 77 235
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.