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An Information Portal to 110790 Biological Macromolecular Structures

Yeast 20S proteasome in complex with the vinyl sulfone LU112
Sequence Clustering and Redundancy Reduction Results
4INU
Sequence Clusters for the Sequence Entities in PDB 4INU
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 168 20
95% 161 168 32
90% 161 168 36
70% 161 168 49
50% 166 175 72
40% 669 717 4
30% 1164 1242 4
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 167 25
95% 160 167 39
90% 160 167 43
70% 160 167 54
50% 160 167 89
40% 165 174 96
30% 165 174 113
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 110 72
95% 157 160 55
90% 157 160 61
70% 157 160 71
50% 162 167 82
40% 162 167 104
30% 344 366 17
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 168 21
95% 161 168 33
90% 161 168 37
70% 161 168 50
50% 161 168 86
40% 166 175 92
30% 166 175 108
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 168 15
95% 161 168 27
90% 161 168 32
70% 161 168 45
50% 161 168 85
40% 166 175 89
30% 166 175 107
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 168 22
95% 161 168 35
90% 161 168 39
70% 161 168 52
50% 166 175 73
40% 166 175 93
30% 345 366 17
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 168 17
95% 161 168 29
90% 161 168 33
70% 161 168 46
50% 166 175 69
40% 670 717 4
30% 1165 1242 4
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 168 18
95% 161 168 30
90% 161 168 34
70% 161 168 47
50% 166 175 70
40% 671 717 4
30% 1166 1242 4
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 168 16
95% 160 168 28
90% 161 169 30
70% 161 169 42
50% 166 176 66
40% 672 717 4
30% 1167 1242 4
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 166 28
95% 161 168 34
90% 161 168 38
70% 161 168 51
50% 166 175 68
40% 166 175 90
30% 1168 1242 4
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 132 52
95% 126 132 70
90% 126 132 75
70% 126 132 87
50% 126 132 123
40% 126 132 145
30% 1169 1242 4
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 168 19
95% 161 168 31
90% 161 168 35
70% 161 168 48
50% 166 175 71
40% 166 175 91
30% 1170 1242 4
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 145 43
95% 157 160 54
90% 157 160 60
70% 157 160 70
50% 162 167 81
40% 162 167 103
30% 162 167 121
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 168 23
95% 161 168 36
90% 161 168 40
70% 161 168 53
50% 166 175 74
40% 166 175 94
30% 166 175 109
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.