POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

Yeast 20S proteasome in complex with the vinyl sulfone LU112
Sequence Clustering and Redundancy Reduction Results
4INU
Sequence Clusters for the Sequence Entities in PDB 4INU
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 75 93
95% 69 75 135
90% 69 75 144
70% 69 75 171
50% 72 80 189
40% 293 336 11
30% 506 576 8
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 74 100
95% 68 74 144
90% 68 74 157
70% 68 74 182
50% 68 74 221
40% 71 79 225
30% 71 79 241
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 62 121
95% 65 68 161
90% 65 68 173
70% 65 68 203
50% 68 73 206
40% 68 73 240
30% 156 176 31
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 75 94
95% 69 75 136
90% 69 75 145
70% 69 75 172
50% 69 75 213
40% 72 80 218
30% 72 80 237
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 75 88
95% 69 75 130
90% 69 75 140
70% 69 75 167
50% 69 75 212
40% 72 80 216
30% 72 80 236
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 75 95
95% 69 75 138
90% 69 75 147
70% 69 75 174
50% 72 80 190
40% 72 80 219
30% 157 176 31
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 75 90
95% 69 75 132
90% 69 75 141
70% 69 75 168
50% 72 80 186
40% 294 336 11
30% 507 576 8
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 75 91
95% 69 75 133
90% 69 75 142
70% 69 75 169
50% 72 80 187
40% 295 336 11
30% 508 576 8
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 75 89
95% 68 75 131
90% 69 76 137
70% 69 76 163
50% 72 81 181
40% 296 336 11
30% 509 576 8
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 73 102
95% 69 75 137
90% 69 75 146
70% 69 75 173
50% 69 75 214
40% 69 75 243
30% 510 576 8
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 38 294
95% 33 38 420
90% 33 38 443
70% 33 38 467
50% 33 38 518
40% 33 38 548
30% 511 576 8
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 75 92
95% 69 75 134
90% 69 75 143
70% 69 75 170
50% 72 80 188
40% 72 80 217
30% 512 576 8
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 68 110
95% 65 68 160
90% 65 68 172
70% 65 68 202
50% 68 73 205
40% 68 73 239
30% 68 73 256
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 75 96
95% 69 75 139
90% 69 75 148
70% 69 75 175
50% 72 80 191
40% 72 80 220
30% 72 80 238
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.