Sequence Similarity Clusters for the Entities in PDB 4INU

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 206 17
95 % 197 206 28
90 % 197 206 31
70 % 197 206 39
50 % 212 226 61
40 % 853 921 3
30 % 1486 1600 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 205 21
95 % 196 205 33
90 % 196 205 36
70 % 196 205 44
50 % 196 205 82
40 % 211 225 82
30 % 211 225 100
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 129 76
95 % 191 194 39
90 % 191 194 45
70 % 191 194 54
50 % 206 213 74
40 % 206 213 92
30 % 434 461 15
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 206 18
95 % 197 206 29
90 % 197 206 32
70 % 197 206 40
50 % 197 206 79
40 % 212 225 81
30 % 212 226 98
Entity #13 | Chains: M,a
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 206 12
95 % 197 206 22
90 % 197 206 26
70 % 197 206 34
50 % 197 206 78
40 % 212 224 83
30 % 212 224 101
Entity #14 | Chains: N,b
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 206 19
95 % 197 206 31
90 % 197 206 34
70 % 197 206 42
50 % 212 224 66
40 % 212 224 84
30 % 435 461 15
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 206 14
95 % 197 206 25
90 % 197 206 28
70 % 197 206 36
50 % 212 226 60
40 % 854 921 3
30 % 1487 1600 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 206 15
95 % 197 206 26
90 % 197 206 29
70 % 197 206 37
50 % 212 225 63
40 % 855 921 3
30 % 1488 1600 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 206 13
95 % 196 206 23
90 % 197 207 24
70 % 197 207 33
50 % 212 227 58
40 % 856 921 3
30 % 1489 1600 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 195 204 23
95 % 197 206 30
90 % 197 206 33
70 % 197 206 41
50 % 212 225 62
40 % 212 225 80
30 % 1490 1600 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 170 44
95 % 162 170 62
90 % 162 170 66
70 % 162 170 77
50 % 162 170 105
40 % 162 170 129
30 % 1491 1600 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 206 16
95 % 197 206 27
90 % 197 206 30
70 % 197 206 38
50 % 212 225 64
40 % 212 226 78
30 % 1492 1600 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 177 42
95 % 197 206 24
90 % 197 206 27
70 % 197 206 35
50 % 212 226 59
40 % 212 226 77
30 % 212 226 97
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 206 20
95 % 197 206 32
90 % 197 206 35
70 % 197 206 43
50 % 212 225 65
40 % 212 226 79
30 % 212 226 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.