Sequence Similarity Clusters for the Entities in PDB 4INT

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 204 17
95 % 187 204 27
90 % 187 204 30
70 % 187 204 38
50 % 189 213 66
40 % 759 869 4
30 % 1323 1509 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 203 22
95 % 186 203 32
90 % 186 203 35
70 % 186 203 44
50 % 186 203 82
40 % 188 212 92
30 % 188 212 109
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 127 77
95 % 181 192 46
90 % 181 192 51
70 % 181 192 61
50 % 183 201 76
40 % 183 201 97
30 % 385 437 16
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 204 18
95 % 187 204 28
90 % 187 204 31
70 % 187 204 39
50 % 187 204 80
40 % 189 212 90
30 % 189 213 106
Entity #13 | Chains: M,a
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 204 12
95 % 187 204 21
90 % 187 204 25
70 % 187 204 33
50 % 187 204 79
40 % 189 212 88
30 % 189 212 108
Entity #14 | Chains: N,b
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 204 19
95 % 187 204 30
90 % 187 204 33
70 % 187 204 42
50 % 189 212 72
40 % 189 212 91
30 % 386 437 16
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 204 14
95 % 187 204 24
90 % 187 204 27
70 % 187 204 35
50 % 189 213 64
40 % 760 869 4
30 % 1324 1509 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 204 15
95 % 187 204 25
90 % 187 204 28
70 % 187 204 36
50 % 189 212 70
40 % 761 869 4
30 % 1325 1509 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 204 13
95 % 186 204 22
90 % 187 205 24
70 % 187 205 32
50 % 189 214 63
40 % 762 869 4
30 % 1326 1509 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 202 23
95 % 187 204 29
90 % 187 204 32
70 % 187 204 41
50 % 189 212 69
40 % 189 212 89
30 % 1327 1509 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 168 43
95 % 156 168 62
90 % 156 168 67
70 % 156 168 77
50 % 156 168 107
40 % 156 168 130
30 % 1328 1509 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 204 16
95 % 187 204 26
90 % 187 204 29
70 % 187 204 37
50 % 189 212 71
40 % 189 213 85
30 % 1329 1509 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 175 41
95 % 187 204 23
90 % 187 204 26
70 % 187 204 34
50 % 189 213 65
40 % 189 213 84
30 % 189 213 105
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 204 20
95 % 187 204 31
90 % 187 204 34
70 % 187 204 43
50 % 189 212 73
40 % 189 213 86
30 % 189 213 107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.