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An Information Portal to 106082 Biological Macromolecular Structures

Yeast 20S proteasome in complex with the vinyl sulfone LU122
Sequence Clustering and Redundancy Reduction Results
4INT
Sequence Clusters for the Sequence Entities in PDB 4INT
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 95
95% 61 75 135
90% 61 75 145
70% 61 75 174
50% 62 81 192
40% 251 340 11
30% 434 583 9
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 74 101
95% 60 74 146
90% 60 74 157
70% 60 74 186
50% 60 74 223
40% 61 80 223
30% 61 80 237
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 63 120
95% 57 68 161
90% 57 68 174
70% 57 68 203
50% 58 74 206
40% 58 74 238
30% 133 178 31
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 96
95% 61 75 136
90% 61 75 146
70% 61 75 175
50% 61 75 215
40% 62 81 218
30% 62 81 232
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 90
95% 61 75 130
90% 61 75 141
70% 61 75 170
50% 61 75 214
40% 62 81 215
30% 62 81 231
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 97
95% 61 75 138
90% 61 75 148
70% 61 75 177
50% 62 81 193
40% 62 81 219
30% 134 178 31
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 92
95% 61 75 132
90% 61 75 142
70% 61 75 171
50% 62 81 189
40% 252 340 11
30% 435 583 9
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 93
95% 61 75 133
90% 61 75 143
70% 61 75 172
50% 62 81 190
40% 253 340 11
30% 436 583 9
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 75 91
95% 60 75 131
90% 61 76 139
70% 61 76 164
50% 62 82 183
40% 254 340 11
30% 437 583 9
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 73 104
95% 61 75 137
90% 61 75 147
70% 61 75 176
50% 62 81 188
40% 62 81 216
30% 438 583 9
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 39 283
95% 30 39 401
90% 30 39 425
70% 30 39 456
50% 30 39 503
40% 30 39 540
30% 439 583 9
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 94
95% 61 75 134
90% 61 75 144
70% 61 75 173
50% 62 81 191
40% 62 81 217
30% 440 583 9
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 68 110
95% 57 68 160
90% 57 68 173
70% 57 68 202
50% 58 74 205
40% 58 74 237
30% 58 74 251
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 98
95% 61 75 139
90% 61 75 149
70% 61 75 178
50% 62 81 194
40% 62 81 220
30% 62 81 233
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.