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Yeast 20S proteasome in complex with the vinyl sulfone LU122
Sequence Clustering and Redundancy Reduction Results
4INT
Sequence Clusters for the Sequence Entities in PDB 4INT
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 44
95% 112 126 64
90% 112 126 67
70% 112 126 81
50% 114 133 108
40% 459 549 6
30% 798 948 5
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 125 48
95% 111 125 69
90% 111 125 73
70% 111 125 88
50% 111 125 127
40% 113 132 135
30% 113 132 155
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 69 115
95% 108 119 77
90% 108 119 80
70% 108 119 95
50% 110 126 117
40% 110 126 140
30% 237 283 19
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 45
95% 112 126 65
90% 112 126 68
70% 112 126 82
50% 112 126 124
40% 114 133 131
30% 114 133 152
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 39
95% 112 126 59
90% 112 126 63
70% 112 126 77
50% 112 126 123
40% 114 133 128
30% 114 133 151
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 46
95% 112 126 67
90% 112 126 70
70% 112 126 84
50% 114 133 109
40% 114 133 132
30% 238 283 19
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 41
95% 112 126 61
90% 112 126 64
70% 112 126 78
50% 114 133 105
40% 460 549 6
30% 799 948 5
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 42
95% 112 126 62
90% 112 126 65
70% 112 126 79
50% 114 133 106
40% 461 549 6
30% 800 948 5
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 126 40
95% 111 126 60
90% 112 127 61
70% 112 127 75
50% 114 134 102
40% 462 549 6
30% 801 948 5
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 124 49
95% 112 126 66
90% 112 126 69
70% 112 126 83
50% 114 133 104
40% 114 133 129
30% 802 948 5
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 90 88
95% 81 90 132
90% 81 90 143
70% 81 90 159
50% 81 90 193
40% 81 90 213
30% 803 948 5
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 43
95% 112 126 63
90% 112 126 66
70% 112 126 80
50% 114 133 107
40% 114 133 130
30% 804 948 5
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 119 50
95% 108 119 76
90% 108 119 79
70% 108 119 94
50% 110 126 116
40% 110 126 139
30% 110 126 157
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 47
95% 112 126 68
90% 112 126 71
70% 112 126 85
50% 114 133 110
40% 114 133 133
30% 114 133 153
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.