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An Information Portal to 105097 Biological Macromolecular Structures

Yeast 20S proteasome in complex with the vinyl sulfone LU122
Sequence Clustering and Redundancy Reduction Results
4INT
Sequence Clusters for the Sequence Entities in PDB 4INT
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 89
95% 61 75 133
90% 61 75 143
70% 61 75 171
50% 61 80 189
40% 247 336 11
30% 427 576 9
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 74 97
95% 60 74 143
90% 60 74 153
70% 60 74 180
50% 60 74 219
40% 60 79 221
30% 60 79 240
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 63 117
95% 57 68 158
90% 57 68 171
70% 57 68 199
50% 57 73 206
40% 57 73 237
30% 131 176 31
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 90
95% 61 75 134
90% 61 75 144
70% 61 75 172
50% 61 75 213
40% 61 80 217
30% 61 80 233
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 84
95% 61 75 128
90% 61 75 139
70% 61 75 167
50% 61 75 212
40% 61 80 215
30% 61 80 232
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 91
95% 61 75 136
90% 61 75 146
70% 61 75 174
50% 61 80 190
40% 61 80 218
30% 132 176 31
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 86
95% 61 75 130
90% 61 75 140
70% 61 75 168
50% 61 80 186
40% 248 336 11
30% 428 576 9
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 87
95% 61 75 131
90% 61 75 141
70% 61 75 169
50% 61 80 187
40% 249 336 11
30% 429 576 9
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 75 85
95% 60 75 129
90% 61 76 137
70% 61 76 161
50% 61 81 180
40% 250 336 11
30% 430 576 9
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 73 100
95% 61 75 135
90% 61 75 145
70% 61 75 173
50% 61 75 214
40% 61 75 243
30% 431 576 9
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 39 280
95% 30 39 399
90% 30 39 424
70% 30 39 453
50% 30 39 497
40% 30 39 534
30% 432 576 9
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 88
95% 61 75 132
90% 61 75 142
70% 61 75 170
50% 61 80 188
40% 61 80 216
30% 433 576 9
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 68 108
95% 57 68 157
90% 57 68 170
70% 57 68 198
50% 57 73 205
40% 57 73 236
30% 57 73 254
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 75 93
95% 61 75 137
90% 61 75 147
70% 61 75 175
50% 61 80 191
40% 61 80 219
30% 61 80 234
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.