Sequence Similarity Clusters for the Entities in PDB 4INT

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 252 14
95 % 229 252 24
90 % 229 252 25
70 % 229 252 34
50 % 241 281 44
40 % 967 1144 3
30 % 1687 1989 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 228 251 17
95 % 228 251 29
90 % 228 251 30
70 % 228 251 39
50 % 228 251 72
40 % 240 280 57
30 % 240 280 75
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 134 82
95 % 188 199 57
90 % 188 199 62
70 % 235 253 27
50 % 235 254 65
40 % 235 254 86
30 % 495 557 12
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 219 24
95 % 229 252 25
90 % 229 252 26
70 % 229 252 35
50 % 229 252 71
40 % 241 280 56
30 % 241 281 71
Entity #13 | Chains: M,a
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 252 9
95 % 229 252 18
90 % 229 252 20
70 % 229 252 29
50 % 229 252 70
40 % 241 270 62
30 % 241 270 78
Entity #14 | Chains: N,b
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 252 15
95 % 229 252 27
90 % 229 252 28
70 % 229 252 37
50 % 241 270 50
40 % 241 270 63
30 % 496 557 12
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 252 11
95 % 229 252 21
90 % 229 252 22
70 % 229 252 31
50 % 241 281 43
40 % 968 1144 3
30 % 1688 1989 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 252 12
95 % 229 252 22
90 % 229 252 23
70 % 229 252 32
50 % 241 281 46
40 % 969 1144 3
30 % 1689 1989 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 228 252 10
95 % 228 252 19
90 % 229 253 19
70 % 229 253 28
50 % 241 282 40
40 % 970 1144 3
30 % 1690 1989 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 250 18
95 % 229 252 26
90 % 229 252 27
70 % 229 252 36
50 % 241 281 45
40 % 241 281 55
30 % 1691 1989 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 216 25
95 % 198 216 36
90 % 198 216 40
70 % 198 216 49
50 % 198 216 86
40 % 198 216 107
30 % 1692 1989 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 252 13
95 % 229 252 23
90 % 229 252 24
70 % 229 252 33
50 % 241 280 47
40 % 241 281 53
30 % 1693 1989 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 206 217 23
95 % 229 252 20
90 % 229 252 21
70 % 229 252 30
50 % 241 281 42
40 % 241 281 52
30 % 241 281 70
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 252 16
95 % 229 252 28
90 % 229 252 29
70 % 229 252 38
50 % 241 280 48
40 % 241 281 54
30 % 241 281 72

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.