Sequence Similarity Clusters for the Entities in PDB 4INT

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 176 33
95 % 161 176 47
90 % 161 176 51
70 % 161 176 61
50 % 163 184 76
40 % 655 753 4
30 % 1141 1306 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 175 37
95 % 160 175 53
90 % 160 175 57
70 % 160 175 66
50 % 160 175 93
40 % 162 183 103
30 % 162 183 116
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 113 82
95 % 156 167 56
90 % 156 167 60
70 % 156 167 71
50 % 158 175 86
40 % 158 175 112
30 % 334 383 17
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 176 34
95 % 161 176 48
90 % 161 176 52
70 % 161 176 62
50 % 161 176 92
40 % 163 184 98
30 % 163 184 112
Entity #13 | Chains: M,a
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 176 28
95 % 161 176 42
90 % 161 176 47
70 % 161 176 57
50 % 161 176 91
40 % 163 184 95
30 % 163 184 111
Entity #14 | Chains: N,b
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 176 35
95 % 161 176 50
90 % 161 176 54
70 % 161 176 64
50 % 163 184 77
40 % 163 184 99
30 % 335 383 17
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 176 30
95 % 161 176 44
90 % 161 176 48
70 % 161 176 58
50 % 163 184 73
40 % 656 753 4
30 % 1142 1306 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 176 31
95 % 161 176 45
90 % 161 176 49
70 % 161 176 59
50 % 163 184 74
40 % 657 753 4
30 % 1143 1306 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 176 29
95 % 160 176 43
90 % 161 177 46
70 % 161 177 56
50 % 163 185 71
40 % 658 753 4
30 % 1144 1306 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 174 38
95 % 161 176 49
90 % 161 176 53
70 % 161 176 63
50 % 163 184 72
40 % 163 184 96
30 % 1145 1306 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 140 49
95 % 130 140 70
90 % 130 140 73
70 % 130 140 87
50 % 130 140 127
40 % 130 140 143
30 % 1146 1306 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 176 32
95 % 161 176 46
90 % 161 176 50
70 % 161 176 60
50 % 163 184 75
40 % 163 184 97
30 % 1147 1306 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 152 41
95 % 156 167 55
90 % 156 167 59
70 % 156 167 70
50 % 158 175 85
40 % 158 175 111
30 % 158 175 127
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 176 36
95 % 161 176 51
90 % 161 176 55
70 % 161 176 65
50 % 163 184 78
40 % 163 184 100
30 % 163 184 113

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.