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Yeast 20S proteasome in complex with the vinyl sulfone LU102
Sequence Clustering and Redundancy Reduction Results
4INR
Sequence Clusters for the Sequence Entities in PDB 4INR
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 87
95% 38 72 138
90% 38 72 152
70% 38 72 177
50% 38 77 185
40% 152 324 11
30% 263 555 8
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 92
95% 38 72 144
90% 38 72 158
70% 38 72 183
50% 38 72 223
40% 38 77 224
30% 38 77 235
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 60 127
95% 36 66 162
90% 36 66 174
70% 36 66 204
50% 36 71 206
40% 36 71 239
30% 83 171 30
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 88
95% 38 72 139
90% 38 72 153
70% 38 72 178
50% 38 72 221
40% 38 77 221
30% 38 77 233
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 82
95% 38 72 133
90% 38 72 148
70% 38 72 173
50% 38 72 220
40% 38 77 219
30% 38 77 232
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 90
95% 38 72 142
90% 38 72 156
70% 38 72 181
50% 38 77 186
40% 38 77 222
30% 84 171 30
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 84
95% 38 72 135
90% 38 72 149
70% 38 72 174
50% 38 77 182
40% 153 324 11
30% 264 555 8
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 85
95% 38 72 136
90% 38 72 150
70% 38 72 175
50% 38 77 183
40% 154 324 11
30% 265 555 8
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 72 83
95% 37 72 134
90% 38 73 141
70% 38 73 165
50% 38 78 178
40% 155 324 11
30% 266 555 8
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 70 99
95% 38 72 141
90% 38 72 155
70% 38 72 180
50% 38 72 222
40% 38 72 251
30% 267 555 8
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 35 330
95% 20 35 465
90% 20 35 487
70% 20 35 521
50% 20 35 567
40% 20 35 597
30% 268 555 8
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 86
95% 38 72 137
90% 38 72 151
70% 38 72 176
50% 38 77 184
40% 38 77 220
30% 269 555 8
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 66 110
95% 36 66 161
90% 36 66 173
70% 36 66 203
50% 36 71 205
40% 36 71 238
30% 36 71 257
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 72 91
95% 38 72 143
90% 38 72 157
70% 38 72 182
50% 38 77 187
40% 38 77 223
30% 38 77 234
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.