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Yeast 20S proteasome in complex with the vinyl sulfone LU102
Sequence Clustering and Redundancy Reduction Results
4INR
Sequence Clusters for the Sequence Entities in PDB 4INR
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 125 41
95% 90 125 61
90% 90 125 64
70% 90 125 78
50% 91 132 104
40% 364 545 6
30% 634 941 5
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 124 46
95% 90 124 68
90% 90 124 71
70% 90 124 85
50% 90 124 125
40% 91 131 132
30% 91 131 152
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 68 114
95% 88 118 76
90% 88 118 79
70% 88 118 95
50% 89 125 115
40% 89 125 139
30% 189 281 19
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 125 42
95% 90 125 62
90% 90 125 65
70% 90 125 79
50% 90 125 122
40% 91 132 127
30% 91 132 149
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 125 36
95% 90 125 56
90% 90 125 60
70% 90 125 74
50% 90 125 121
40% 91 132 124
30% 91 132 148
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 125 43
95% 90 125 64
90% 90 125 67
70% 90 125 81
50% 91 132 105
40% 91 132 128
30% 190 281 19
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 125 38
95% 90 125 58
90% 90 125 61
70% 90 125 75
50% 91 132 101
40% 365 545 6
30% 635 941 5
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 125 39
95% 90 125 59
90% 90 125 62
70% 90 125 76
50% 91 132 102
40% 366 545 6
30% 636 941 5
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 125 37
95% 89 125 57
90% 90 126 59
70% 90 126 73
50% 91 133 99
40% 367 545 6
30% 637 941 5
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 123 47
95% 90 125 63
90% 90 125 66
70% 90 125 80
50% 91 132 100
40% 91 132 125
30% 638 941 5
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 89 81
95% 72 89 130
90% 72 89 140
70% 72 89 157
50% 72 89 194
40% 72 89 215
30% 639 941 5
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 125 40
95% 90 125 60
90% 90 125 63
70% 90 125 77
50% 91 132 103
40% 91 132 126
30% 640 941 5
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 118 49
95% 88 118 75
90% 88 118 78
70% 88 118 94
50% 89 125 114
40% 89 125 138
30% 89 125 157
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 125 44
95% 90 125 65
90% 90 125 68
70% 90 125 82
50% 91 132 106
40% 91 132 129
30% 91 132 150
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.