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Yeast 20S proteasome in complex with the vinyl sulfone LU102
Sequence Clustering and Redundancy Reduction Results
4INR
Sequence Clusters for the Sequence Entities in PDB 4INR
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 169 20
95% 130 169 31
90% 130 169 35
70% 130 169 47
50% 131 176 73
40% 524 721 4
30% 914 1249 4
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 168 24
95% 130 168 37
90% 130 168 41
70% 130 168 54
50% 130 168 87
40% 131 175 100
30% 131 175 116
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 111 63
95% 128 161 55
90% 128 161 61
70% 128 161 71
50% 129 168 81
40% 129 168 105
30% 269 368 17
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 169 21
95% 130 169 32
90% 130 169 36
70% 130 169 48
50% 130 169 86
40% 131 176 96
30% 131 176 113
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 169 15
95% 130 169 26
90% 130 169 31
70% 130 169 43
50% 130 169 85
40% 131 176 93
30% 131 176 112
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 169 22
95% 130 169 34
90% 130 169 38
70% 130 169 50
50% 131 176 74
40% 131 176 97
30% 270 368 17
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 169 17
95% 130 169 28
90% 130 169 32
70% 130 169 44
50% 131 176 70
40% 525 721 4
30% 915 1249 4
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 169 18
95% 130 169 29
90% 130 169 33
70% 130 169 45
50% 131 176 71
40% 526 721 4
30% 916 1249 4
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 169 16
95% 129 169 27
90% 130 170 30
70% 130 170 42
50% 131 177 65
40% 527 721 4
30% 917 1249 4
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 167 26
95% 130 169 33
90% 130 169 37
70% 130 169 49
50% 131 176 69
40% 131 176 94
30% 918 1249 4
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 133 50
95% 112 133 69
90% 112 133 73
70% 112 133 86
50% 112 133 122
40% 112 133 144
30% 919 1249 4
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 169 19
95% 130 169 30
90% 130 169 34
70% 130 169 46
50% 131 176 72
40% 131 176 95
30% 920 1249 4
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 146 43
95% 128 161 54
90% 128 161 60
70% 128 161 70
50% 129 168 80
40% 129 168 104
30% 129 168 122
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 169 23
95% 130 169 35
90% 130 169 39
70% 130 169 51
50% 131 176 75
40% 131 176 98
30% 131 176 114
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.