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An Information Portal to 110790 Biological Macromolecular Structures

Yeast 20S proteasome in complex with the vinyl sulfone LU102
Sequence Clustering and Redundancy Reduction Results
4INR
Sequence Clusters for the Sequence Entities in PDB 4INR
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 168 20
95% 129 168 32
90% 129 168 36
70% 129 168 49
50% 130 175 72
40% 520 717 4
30% 907 1242 4
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 167 25
95% 129 167 39
90% 129 167 43
70% 129 167 54
50% 129 167 89
40% 130 174 96
30% 130 174 113
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 110 72
95% 127 160 55
90% 127 160 61
70% 127 160 71
50% 128 167 82
40% 128 167 104
30% 267 366 17
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 168 21
95% 129 168 33
90% 129 168 37
70% 129 168 50
50% 129 168 86
40% 130 175 92
30% 130 175 108
Entity #13: Chains: M,a - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 168 15
95% 129 168 27
90% 129 168 32
70% 129 168 45
50% 129 168 85
40% 130 175 89
30% 130 175 107
Entity #14: Chains: N,b - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 168 22
95% 129 168 35
90% 129 168 39
70% 129 168 52
50% 130 175 73
40% 130 175 93
30% 268 366 17
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 258 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 168 17
95% 129 168 29
90% 129 168 33
70% 129 168 46
50% 130 175 69
40% 521 717 4
30% 908 1242 4
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 254 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 168 18
95% 129 168 30
90% 129 168 34
70% 129 168 47
50% 130 175 70
40% 522 717 4
30% 909 1242 4
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 260 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 168 16
95% 128 168 28
90% 129 169 30
70% 129 169 42
50% 130 176 66
40% 523 717 4
30% 910 1242 4
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 166 28
95% 129 168 34
90% 129 168 38
70% 129 168 51
50% 130 175 68
40% 130 175 90
30% 911 1242 4
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 288 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 132 52
95% 111 132 70
90% 111 132 75
70% 111 132 87
50% 111 132 123
40% 111 132 145
30% 912 1242 4
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 252 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 168 19
95% 129 168 31
90% 129 168 35
70% 129 168 48
50% 130 175 71
40% 130 175 91
30% 913 1242 4
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 232 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 145 43
95% 127 160 54
90% 127 160 60
70% 127 160 70
50% 128 167 81
40% 128 167 103
30% 128 167 121
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 168 23
95% 129 168 36
90% 129 168 40
70% 129 168 53
50% 130 175 74
40% 130 175 94
30% 130 175 109
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.