Sequence Similarity Clusters for the Entities in PDB 4IJS

Entity #1 | Chains: A,B,C,D
Nucleoprotein protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17281
95 % 1 2 6093 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 2 6077
70 % 1 2 5922
50 % 1 2 5562
40 % 7 11 1442
30 % 7 11 1431
Entity #2 | Chains: E,F,G,H
RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures