Sequence Similarity Clusters for the Entities in PDB 4IJS

Entity #1 | Chains: A,B,C,D
Nucleoprotein protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21241
95 % 1 2 5958 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 2 5979
70 % 1 2 5847
50 % 1 2 5503
40 % 7 11 1480
30 % 7 11 1463
Entity #2 | Chains: E,F,G,H
RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures