Sequence Similarity Clusters for the Entities in PDB 4IJS

Entity #1 | Chains: A,B,C,D
Nucleoprotein protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19585
95 % 1 2 5473 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 2 5486
70 % 1 2 5393
50 % 1 2 5099
40 % 7 11 1403
30 % 7 11 1374
Entity #2 | Chains: E,F,G,H
RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.