Sequence Similarity Clusters for the Entities in PDB 4IJD

Entity #1 | Chains: A,B
Histone-lysine N-methyltransferase PRDM9 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35227
95 % 1 1 26378 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 28880
70 % 1 1 25964
50 % 1 1 22272
40 % 1 1 19630
30 % 1 1 16411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4IJD 1 A, B Histone-lysine N-methyltransferase PRDM9 UNP residues 195-415 9606 2.1.1.43 | Details