Sequence Similarity Clusters for the Entities in PDB 4IIM

Entity #1 | Chains: A,B
Intersectin-1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49022
95 % 1 1 36605 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 34951
70 % 2 2 18844
50 % 2 2 16366
40 % 2 3 7852
30 % 2 3 6923
Entity #2 | Chains: C,D,E
peptide ligand protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures