Sequence Similarity Clusters for the Entities in PDB 4IIM

Entity #1 | Chains: A,B
Intersectin-1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48326
95 % 1 1 36095 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 34485
70 % 2 2 18561
50 % 2 2 16133
40 % 2 3 7748
30 % 2 3 6838
Entity #2 | Chains: C,D,E
peptide ligand protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.