Sequence Similarity Clusters for the Entities in PDB 4IIJ

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 88 124
95 % 62 166 77 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 62 167 81
70 % 62 174 91
50 % 62 174 128
40 % 123 346 31
30 % 125 356 41
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 57 251
95 % 62 162 78 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 62 167 79
70 % 62 172 90
50 % 62 172 127
40 % 124 346 31
30 % 126 356 41
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 63 571
95 % 53 76 606 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 53 76 635
70 % 53 76 680
50 % 53 76 730
40 % 53 76 765
30 % 53 76 756
Entity #4 | Chains: F
Tubulin tyrosine ligase, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 58 642
95 % 49 58 858 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.9
PDBFlex
90 % 49 58 891
70 % 49 61 865
50 % 49 61 923
40 % 49 61 949
30 % 49 61 926

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.