Sequence Similarity Clusters for the Entities in PDB 4II3

Entity #1 | Chains: A,C
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16260
95 % 4 4 12307 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 6.6
PDBFlex
90 % 4 4 12123
70 % 4 4 11451
50 % 10 10 3549
40 % 10 10 3394
30 % 10 10 3124
Entity #2 | Chains: B,D
Ubiquitin-60S ribosomal protein L40 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 9746
95 % 4 5 9582 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 7 8 6705
70 % 334 471 8
50 % 344 492 10
40 % 357 518 15
30 % 440 685 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures