Sequence Similarity Clusters for the Entities in PDB 4II3

Entity #1 | Chains: A,C
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14352
95 % 4 4 10934 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.8
PDBFlex
90 % 4 4 10787
70 % 4 4 10236
50 % 10 10 3290
40 % 10 10 3196
30 % 10 10 3006
Entity #2 | Chains: B,D
Ubiquitin-60S ribosomal protein L40 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47367
95 % 3 4 13306 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 293 418 6
70 % 310 441 8
50 % 320 462 11
40 % 333 486 16
30 % 614 1038 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.