Sequence Similarity Clusters for the Entities in PDB 4II3

Entity #1 | Chains: A,C
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14576
95 % 4 4 11084 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.8
PDBFlex
90 % 4 4 10937
70 % 4 4 10382
50 % 10 10 3337
40 % 10 10 3236
30 % 10 10 3043
Entity #2 | Chains: B,D
Ubiquitin-60S ribosomal protein L40 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48057
95 % 3 4 13490 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 295 423 6
70 % 312 446 8
50 % 322 467 11
40 % 335 491 16
30 % 617 1044 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures