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Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg
Sequence Clustering and Redundancy Reduction Results
4II2
Sequence Clusters for the Sequence Entities in PDB 4II2
Entity #1: Chains: A - Ubiquitin-activating enzyme E1 1 protein, length: 1001 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 19571
95% 1 2 16840
90% 1 2 16417
70% 1 2 15247
50% 2 4 6850
40% 2 4 6317
30% 2 4 5623
Entity #2: Chains: B - Ubiquitin-60S ribosomal protein L40 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57789
95% 1 2 28755
90% 96 263 11
70% 102 275 16
50% 108 295 15
40% 118 316 18
30% 276 766 10
Entity #3: Chains: C - Ubiquitin-conjugating enzyme E2 4 protein, length: 163 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51395
95% 1 1 35752
90% 1 1 34145
70% 21 41 624
50% 35 66 302
40% 66 134 166
30% 67 142 176
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.