Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21925
95 % 1 2 18777
90 % 1 2 18269
70 % 1 2 16880
50 % 2 4 7584
40 % 2 4 6983
30 % 2 4 6206
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63677
95 % 1 2 31766
90 % 111 309 8
70 % 120 331 8
50 % 126 351 13
40 % 136 373 16
30 % 308 851 9
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56900
95 % 1 1 39419
90 % 1 1 37540
70 % 27 51 496
50 % 42 80 275
40 % 80 161 167
30 % 81 169 175

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.