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Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg
Sequence Clustering and Redundancy Reduction Results
4II2
Sequence Clusters for the Sequence Entities in PDB 4II2
Entity #1: Chains: A - Ubiquitin-activating enzyme E1 1 protein, length: 1001 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 19389
95% 1 2 16685
90% 1 2 16265
70% 1 2 15109
50% 2 4 6794
40% 2 4 6264
30% 2 4 5580
Entity #2: Chains: B - Ubiquitin-60S ribosomal protein L40 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57317
95% 1 2 28517
90% 94 261 11
70% 100 273 16
50% 106 293 16
40% 116 314 18
30% 273 763 10
Entity #3: Chains: C - Ubiquitin-conjugating enzyme E2 4 protein, length: 163 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50967
95% 1 1 35463
90% 1 1 33884
70% 21 40 633
50% 32 62 308
40% 63 129 171
30% 64 137 178
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.