Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14210
95 % 1 4 10838 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 2.2
PDBFlex
90 % 1 4 10702
70 % 1 4 10166
50 % 3 9 3703
40 % 3 9 3563
30 % 3 9 3335
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70563
95 % 1 3 24438
90 % 165 410 6
70 % 172 430 8
50 % 178 451 12
40 % 188 475 16
30 % 401 1026 9
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63281
95 % 1 1 43863
90 % 1 1 41650
70 % 31 57 528
50 % 47 88 303
40 % 87 176 166
30 % 88 184 176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.