Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14011
95 % 1 4 10681 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.8
PDBFlex
90 % 1 4 10542
70 % 1 4 9989
50 % 3 9 3654
40 % 3 9 3519
30 % 3 9 3295
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69539
95 % 1 2 35042
90 % 163 400 6
70 % 170 420 8
50 % 176 441 12
40 % 186 465 17
30 % 399 1012 10
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62449
95 % 1 1 43250
90 % 1 1 41082
70 % 31 57 524
50 % 47 88 297
40 % 86 174 169
30 % 87 182 177

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.