Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16677
95 % 1 4 12573 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 6.6
PDBFlex
90 % 1 4 12378
70 % 1 4 11707
50 % 3 10 3644
40 % 3 10 3484
30 % 3 10 3201
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55169
95 % 1 2 31429 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.9
PDBFlex
90 % 1 2 30089
70 % 194 485 8
50 % 200 506 10
40 % 206 526 15
30 % 243 676 20
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59587
95 % 1 1 48695
90 % 1 1 46208
70 % 31 59 586
50 % 49 95 331
40 % 87 183 180
30 % 91 197 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures