Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14919
95 % 1 4 11343 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.8
PDBFlex
90 % 1 4 11196
70 % 1 4 10612
50 % 3 10 3420
40 % 3 10 3312
30 % 3 10 3115
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73368
95 % 1 3 25456
90 % 178 437 6
70 % 186 460 8
50 % 192 481 11
40 % 202 505 15
30 % 418 1062 9
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65905
95 % 1 1 45598
90 % 1 1 43220
70 % 31 58 567
50 % 48 93 314
40 % 88 181 172
30 % 90 191 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures