Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14576
95 % 1 4 11084 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.8
PDBFlex
90 % 1 4 10937
70 % 1 4 10382
50 % 3 10 3337
40 % 3 10 3236
30 % 3 10 3043
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72080
95 % 1 3 24989
90 % 168 423 6
70 % 176 446 8
50 % 182 467 11
40 % 192 491 16
30 % 406 1044 9
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64704
95 % 1 1 44813
90 % 1 1 42512
70 % 31 58 558
50 % 47 92 306
40 % 87 180 166
30 % 88 188 171

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures