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Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg
Sequence Clustering and Redundancy Reduction Results
4II2
Sequence Clusters for the Sequence Entities in PDB 4II2
Entity #1: Chains: A - Ubiquitin-activating enzyme E1 1 protein, length: 1001 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 19416
95% 1 2 16710
90% 1 2 16291
70% 1 2 15134
50% 2 4 6806
40% 2 4 6275
30% 2 4 5587
Entity #2: Chains: B - Ubiquitin-60S ribosomal protein L40 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57410
95% 1 2 28561
90% 94 261 11
70% 100 273 16
50% 106 293 16
40% 116 314 18
30% 273 763 10
Entity #3: Chains: C - Ubiquitin-conjugating enzyme E2 4 protein, length: 163 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51041
95% 1 1 35517
90% 1 1 33934
70% 21 41 617
50% 32 63 306
40% 63 130 169
30% 64 138 179
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.