Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21633
95 % 1 2 18549
90 % 1 2 18054
70 % 1 2 16669
50 % 2 4 7484
40 % 2 4 6901
30 % 2 4 6130
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62885
95 % 1 2 31405
90 % 107 304 10
70 % 115 325 8
50 % 121 345 14
40 % 131 366 16
30 % 301 840 10
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56190
95 % 1 1 38951
90 % 1 1 37092
70 % 27 51 482
50 % 42 80 266
40 % 80 161 160
30 % 81 169 171

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.