Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22345
95 % 1 2 19105
90 % 1 2 18583
70 % 1 2 17165
50 % 2 4 7734
40 % 2 4 7118
30 % 2 4 6311
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64770
95 % 1 2 32338
90 % 112 318 6
70 % 121 340 8
50 % 127 361 13
40 % 137 383 17
30 % 315 868 9
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57930
95 % 1 1 40113
90 % 1 1 38191
70 % 27 51 506
50 % 42 81 282
40 % 80 163 164
30 % 81 171 175

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.