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Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg
Sequence Clustering and Redundancy Reduction Results
4II2
Sequence Clusters for the Sequence Entities in PDB 4II2
Entity #1: Chains: A - Ubiquitin-activating enzyme E1 1 protein, length: 1001 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18407
95% 1 2 15927
90% 1 2 15534
70% 1 2 14410
50% 2 4 6488
40% 2 4 5978
30% 2 4 5349
Entity #2: Chains: B - Ubiquitin-60S ribosomal protein L40 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54497
95% 1 2 27061
90% 81 233 14
70% 87 245 17
50% 93 265 19
40% 103 286 24
30% 247 719 10
Entity #3: Chains: C - Ubiquitin-conjugating enzyme E2 4 protein, length: 163 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48320
95% 1 1 33657
90% 1 1 32193
70% 18 36 652
50% 26 55 326
40% 55 120 160
30% 56 128 178
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.