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Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg
Sequence Clustering and Redundancy Reduction Results
4II2
Sequence Clusters for the Sequence Entities in PDB 4II2
Entity #1: Chains: A - Ubiquitin-activating enzyme E1 1 protein, length: 1001 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18369
95% 1 2 15891
90% 1 2 15500
70% 1 2 14385
50% 2 4 6478
40% 2 4 5971
30% 2 4 5343
Entity #2: Chains: B - Ubiquitin-60S ribosomal protein L40 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54399
95% 1 2 27017
90% 81 233 14
70% 87 245 17
50% 93 265 19
40% 103 286 24
30% 246 718 10
Entity #3: Chains: C - Ubiquitin-conjugating enzyme E2 4 protein, length: 163 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48229
95% 1 1 33607
90% 1 1 32146
70% 18 36 652
50% 26 55 325
40% 55 120 160
30% 56 128 178
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.