Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22127
95 % 1 2 18933
90 % 1 2 18418
70 % 1 2 17015
50 % 2 4 7653
40 % 2 4 7051
30 % 2 4 6257
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64188
95 % 1 2 32022
90 % 111 314 6
70 % 120 336 8
50 % 126 356 13
40 % 136 378 17
30 % 309 858 9
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57381
95 % 1 1 39762
90 % 1 1 37862
70 % 27 51 500
50 % 42 81 278
40 % 80 163 161
30 % 81 171 175

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.