Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16332
95 % 1 4 12355 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 6.6
PDBFlex
90 % 1 4 12170
70 % 1 4 11495
50 % 3 10 3566
40 % 3 10 3408
30 % 3 10 3138
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54415
95 % 1 2 30895 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.9
PDBFlex
90 % 1 2 29608
70 % 192 477 8
50 % 198 498 10
40 % 209 524 15
30 % 254 691 18
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58765
95 % 1 1 48070
90 % 1 1 45650
70 % 31 58 573
50 % 49 94 327
40 % 87 181 181
30 % 91 195 185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures