Sequence Similarity Clusters for the Entities in PDB 4II2

Entity #1 | Chains: A
Ubiquitin-activating enzyme E1 1 protein, length: 1001 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 17086
95 % 1 4 12907 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 6.6
PDBFlex
90 % 1 4 12700
70 % 1 4 11972
50 % 3 11 3324
40 % 3 11 3206
30 % 3 11 2958
Entity #2 | Chains: B
Ubiquitin-60S ribosomal protein L40 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56291
95 % 1 2 32099 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.9
PDBFlex
90 % 1 2 30716
70 % 197 496 8
50 % 203 517 11
40 % 208 534 17
30 % 247 689 20
Entity #3 | Chains: C
Ubiquitin-conjugating enzyme E2 4 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60743
95 % 1 1 49647
90 % 1 1 47074
70 % 32 60 597
50 % 50 96 352
40 % 91 188 179
30 % 95 202 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures