Sequence Similarity Clusters for the Entities in PDB 4IHJ

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 91 114
95 % 6 169 75 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 6 170 79
70 % 6 177 91
50 % 6 177 123
40 % 11 352 28
30 % 11 362 42
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 59 241
95 % 6 165 79 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 6 170 75
70 % 6 175 90
50 % 6 175 122
40 % 12 352 28
30 % 12 362 42
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 65 558
95 % 4 78 599 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 4 78 624
70 % 4 78 669
50 % 4 78 715
40 % 4 78 743
30 % 4 78 743
Entity #4 | Chains: F
TUBULIN TYROSINE LIGASE, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 60 612
95 % 4 60 828 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.9
PDBFlex
90 % 4 60 862
70 % 4 63 835
50 % 4 63 891
40 % 4 63 913
30 % 4 63 899

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.