Sequence Similarity Clusters for the Entities in PDB 4IHJ

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 95 112
95 % 6 173 75 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 6 174 80
70 % 6 182 91
50 % 6 182 121
40 % 11 362 29
30 % 11 372 43
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 63 237
95 % 6 169 77 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 6 174 77
70 % 6 180 90
50 % 6 180 120
40 % 12 362 29
30 % 12 372 43
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 67 547
95 % 4 80 591 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 4 80 621
70 % 4 80 658
50 % 4 80 702
40 % 4 80 733
30 % 4 80 731
Entity #4 | Chains: F
TUBULIN TYROSINE LIGASE, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 64 576
95 % 4 64 783 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.9
PDBFlex
90 % 4 64 815
70 % 4 67 788
50 % 4 67 835
40 % 4 67 876
30 % 4 67 861

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures