Sequence Similarity Clusters for the Entities in PDB 4IHJ

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 83 160
95 % 6 158 79 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 6 159 82
70 % 6 166 99
50 % 6 166 136
40 % 11 330 34
30 % 11 340 48
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 53 265
95 % 6 154 81 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 6 159 81
70 % 6 164 98
50 % 6 164 135
40 % 12 330 34
30 % 12 340 48
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 59 632
95 % 4 72 653
90 % 4 72 679
70 % 4 72 727
50 % 4 72 775
40 % 4 72 807
30 % 4 72 798
Entity #4 | Chains: F
TUBULIN TYROSINE LIGASE, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 54 681
95 % 4 54 931 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 1.0
PDBFlex
90 % 4 54 964
70 % 4 57 923
50 % 4 57 975
40 % 4 57 998
30 % 4 57 970

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.