Sequence Similarity Clusters for the Entities in PDB 4IHJ

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 72 168
95 % 5 141 108 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 5 141 113
70 % 5 148 111
50 % 5 148 149
40 % 9 294 50
30 % 9 304 59
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 42 374
95 % 5 136 113
90 % 5 141 109
70 % 5 146 110
50 % 5 146 148
40 % 10 294 50
30 % 10 304 59
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 54 682
95 % 4 67 708 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 4 67 737
70 % 4 67 789
50 % 4 67 836
40 % 4 67 869
30 % 4 67 852
Entity #4 | Chains: F
TUBULIN TYROSINE LIGASE, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 46 810
95 % 4 46 1102 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 4 46 1119
70 % 4 49 1059
50 % 4 49 1108
40 % 4 49 1121
30 % 4 49 1106

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.