POP-OUT | CLOSE
 
X-ray crystal structure of Escherichia coli sigma70 holoenzyme
Sequence Clustering and Redundancy Reduction Results
4IGC
Sequence Clusters for the Sequence Entities in PDB 4IGC
Entity #1: Chains: A,B,F,G - DNA-directed RNA polymerase subunit alpha protein, length: 329 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 11 618
95% 1 11 889
90% 1 11 911
70% 1 11 937
50% 1 11 1012
40% 28 48 209
30% 29 49 226
Entity #2: Chains: C,H - DNA-directed RNA polymerase subunit beta protein, length: 1342 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 14 1034
95% 4 15 1348
90% 4 15 1380
70% 4 15 1410
50% 4 15 1488
40% 4 15 1528
30% 4 15 1475
Entity #3: Chains: D,I - DNA-directed RNA polymerase subunit beta' protein, length: 1407 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 15 961
95% 4 15 1347
90% 4 15 1379
70% 4 15 1409
50% 4 15 1487
40% 4 15 1527
30% 4 15 1474
Entity #4: Chains: E,J - DNA-directed RNA polymerase subunit omega protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 15 1026
95% 4 15 1411
90% 4 15 1452
70% 4 15 1490
50% 4 15 1564
40% 4 15 1598
30% 4 15 1543
Entity #5: Chains: X,Y - RNA polymerase sigma factor RpoD protein, length: 613 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 1385
95% 2 12 1810
90% 2 12 1842
70% 2 12 1866
50% 2 12 1920
40% 2 12 1930
30% 2 12 1846
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.