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Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19925
95% 1 3 16911
90% 1 3 16492
70% 1 3 15281
50% 1 3 13417
40% 1 3 12059
30% 1 3 10412
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37964
95% 1 2 19145
90% 1 2 18574
70% 1 2 17085
50% 1 2 15006
40% 1 2 13454
30% 1 2 11630
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48175
95% 1 1 33782
90% 1 1 32294
70% 1 1 28817
50% 1 1 24815
40% 1 1 21990
30% 1 1 18730
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 29120
95% 1 3 17268
90% 1 3 16826
70% 1 3 15577
50% 1 3 13675
40% 1 3 12282
30% 19 35 364
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40633
95% 1 2 20471
90% 1 2 19856
70% 1 2 18202
50% 1 2 15874
40% 1 2 14173
30% 1 2 12186
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 29325
95% 1 2 22811
90% 1 2 22112
70% 1 2 20164
50% 1 2 17470
40% 1 2 15476
30% 1 2 13167
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44025
95% 1 2 22347
90% 1 2 21665
70% 1 2 19781
50% 1 2 17154
40% 1 2 15212
30% 1 2 12948
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44741
95% 1 2 22697
90% 1 2 22001
70% 1 2 20070
50% 1 2 17393
40% 1 2 15407
30% 1 2 13110
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 29362
95% 1 2 22834
90% 1 2 22135
70% 1 2 20184
50% 1 2 17488
40% 1 2 15491
30% 1 2 13180
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 25874
95% 1 2 20833
90% 1 2 20208
70% 1 2 18510
50% 1 2 16136
40% 1 2 14363
30% 1 2 12322
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 27522
95% 1 2 21790
90% 1 2 21127
70% 1 2 19292
50% 1 2 16769
40% 1 2 14886
30% 1 2 12700
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.