Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 7767
95 % 1 8 8086
90 % 1 8 8032
70 % 1 8 7731
50 % 1 8 7058
40 % 1 8 6532
30 % 1 8 5796
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 9987
95 % 1 7 9178
90 % 1 7 9075
70 % 1 7 8628
50 % 1 7 7844
40 % 1 7 7220
30 % 1 7 6395
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57672
95 % 1 1 40141
90 % 1 1 38218
70 % 1 1 33796
50 % 1 1 28910
40 % 1 1 25520
30 % 1 1 21628
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9475
95 % 1 8 8337
90 % 1 8 8272
70 % 1 8 7933
50 % 1 8 7221
40 % 1 8 6673
30 % 19 40 440
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 16408
95 % 1 7 9305
90 % 1 7 9199
70 % 1 7 8748
50 % 1 7 7962
40 % 1 7 7327
30 % 1 7 6488
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9485
95 % 1 7 9518
90 % 1 7 9414
70 % 1 7 8958
50 % 1 7 8159
40 % 1 7 7496
30 % 1 7 6628
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 13751
95 % 1 7 9469
90 % 1 7 9368
70 % 1 7 8919
50 % 1 7 8127
40 % 1 7 7466
30 % 1 7 6607
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24809
95 % 1 7 9505
90 % 1 7 9402
70 % 1 7 8951
50 % 1 7 8153
40 % 1 7 7489
30 % 1 7 6623
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9489
95 % 1 7 9522
90 % 1 7 9418
70 % 1 7 8962
50 % 1 7 8161
40 % 1 7 7498
30 % 1 7 6630
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 10785
95 % 1 6 10594
90 % 1 6 10460
70 % 1 6 9896
50 % 1 6 8962
40 % 1 6 8181
30 % 1 6 7202
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9372
95 % 1 7 9422
90 % 1 7 9321
70 % 1 7 8867
50 % 1 7 8072
40 % 1 7 7417
30 % 1 7 6567

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.