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Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20201
95% 1 3 17130
90% 1 3 16695
70% 1 3 15467
50% 1 3 13571
40% 1 3 12195
30% 1 3 10521
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 38468
95% 1 2 19389
90% 1 2 18803
70% 1 2 17298
50% 1 2 15184
40% 1 2 13608
30% 1 2 11754
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48801
95% 1 1 34195
90% 1 1 32683
70% 1 1 29150
50% 1 1 25081
40% 1 1 22218
30% 1 1 18917
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 29528
95% 1 3 17494
90% 1 3 17039
70% 1 3 15776
50% 1 3 13840
40% 1 3 12424
30% 19 35 369
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41181
95% 1 2 20737
90% 1 2 20107
70% 1 2 18430
50% 1 2 16067
40% 1 2 14340
30% 1 2 12321
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 29736
95% 1 2 23106
90% 1 2 22390
70% 1 2 20408
50% 1 2 17667
40% 1 2 15646
30% 1 2 13307
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44613
95% 1 2 22633
90% 1 2 21935
70% 1 2 20020
50% 1 2 17349
40% 1 2 15379
30% 1 2 13088
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45342
95% 1 2 22989
90% 1 2 22277
70% 1 2 20313
50% 1 2 17590
40% 1 2 15577
30% 1 2 13250
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 29775
95% 1 2 23130
90% 1 2 22414
70% 1 2 20429
50% 1 2 17686
40% 1 2 15662
30% 1 2 13321
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 26226
95% 1 2 21101
90% 1 2 20461
70% 1 2 18740
50% 1 2 16332
40% 1 2 14533
30% 1 2 12460
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 27908
95% 1 2 22074
90% 1 2 21396
70% 1 2 19533
50% 1 2 16968
40% 1 2 15056
30% 1 2 12842
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.