Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 4232
95 % 1 10 5021 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.9
PDBFlex
90 % 1 10 5042
70 % 1 10 4950
50 % 1 10 4747
40 % 1 10 4493
30 % 1 10 4126
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 9908
95 % 1 8 8065 Flexibility: High
Max RMSD: 22.1, Avg RMSD: 14.0
PDBFlex
90 % 1 8 8020
70 % 1 8 7765
50 % 1 8 7146
40 % 1 8 6643
30 % 1 8 5928
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62199
95 % 1 1 43349
90 % 1 1 41181
70 % 1 1 36248
50 % 1 1 30876
40 % 1 1 27238
30 % 1 1 23101
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 4965
95 % 1 10 5058 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 1 10 5078
70 % 1 10 4993
50 % 1 10 4777
40 % 1 10 4522
30 % 19 42 478
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 17921
95 % 1 9 5416 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 1 9 5430
70 % 1 9 5362
50 % 1 9 5084
40 % 1 9 4798
30 % 1 9 4374
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 4977
95 % 1 9 5692 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 9 5703
70 % 1 9 5596
50 % 1 9 5279
40 % 1 9 4962
30 % 1 9 4490
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 7087
95 % 1 9 5631
90 % 1 9 5642
70 % 1 9 5546
50 % 1 9 5237
40 % 1 9 4925
30 % 1 9 4470
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26983
95 % 1 9 5683 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 1 9 5693
70 % 1 9 5588
50 % 1 9 5270
40 % 1 9 4956
30 % 1 9 4487
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 4979
95 % 1 9 5693 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 1 9 5705
70 % 1 9 5599
50 % 1 9 5283
40 % 1 9 4965
30 % 1 9 4493
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10081
95 % 1 7 10139 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 1 7 10026
70 % 1 7 9536
50 % 1 7 8639
40 % 1 7 7917
30 % 1 7 6994
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 4843
95 % 1 9 5578 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.9
PDBFlex
90 % 1 9 5593
70 % 1 9 5504
50 % 1 9 5200
40 % 1 9 4886
30 % 1 9 4446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.