Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6953
95 % 1 9 7483 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 2.1
PDBFlex
90 % 1 9 7438
70 % 1 9 7216
50 % 1 9 6653
40 % 1 9 6193
30 % 1 9 5544
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 9772
95 % 1 8 7951 Flexibility: High
Max RMSD: 22.1, Avg RMSD: 14.1
PDBFlex
90 % 1 8 7906
70 % 1 8 7617
50 % 1 8 7018
40 % 1 8 6531
30 % 1 8 5827
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61302
95 % 1 1 42701
90 % 1 1 40579
70 % 1 1 35785
50 % 1 1 30534
40 % 1 1 26946
30 % 1 1 22847
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 8678
95 % 1 9 7549 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 9 7508
70 % 1 9 7280
50 % 1 9 6711
40 % 1 9 6242
30 % 19 41 486
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 17617
95 % 1 8 8334 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 1 8 8278
70 % 1 8 7949
50 % 1 8 7276
40 % 1 8 6758
30 % 1 8 6008
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 8712
95 % 1 8 8972 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 8 8891
70 % 1 8 8507
50 % 1 8 7708
40 % 1 8 7095
30 % 1 8 6261
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 14696
95 % 1 8 8838 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 1 8 8764
70 % 1 8 8399
50 % 1 8 7626
40 % 1 8 7023
30 % 1 8 6209
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26509
95 % 1 8 8946 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 1 8 8868
70 % 1 8 8487
50 % 1 8 7693
40 % 1 8 7081
30 % 1 8 6252
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 8721
95 % 1 8 8980 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.2
PDBFlex
90 % 1 8 8900
70 % 1 8 8514
50 % 1 8 7713
40 % 1 8 7099
30 % 1 8 6265
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 9942
95 % 1 7 9984 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 1 7 9874
70 % 1 7 9377
50 % 1 7 8511
40 % 1 7 7804
30 % 1 7 6891
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 8390
95 % 1 8 8702 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 2.1
PDBFlex
90 % 1 8 8636
70 % 1 8 8291
50 % 1 8 7537
40 % 1 8 6949
30 % 1 8 6159

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.