Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9081
95 % 1 7 9163
90 % 1 7 9069
70 % 1 7 8643
50 % 1 7 7883
40 % 1 7 7253
30 % 1 7 6438
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 12734
95 % 1 6 9723
90 % 1 6 9602
70 % 1 6 9125
50 % 1 6 8320
40 % 1 6 7651
30 % 1 6 6781
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56381
95 % 1 1 39290
90 % 1 1 37423
70 % 1 1 33125
50 % 1 1 28350
40 % 1 1 25038
30 % 1 1 21220
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 11170
95 % 1 7 9250
90 % 1 7 9155
70 % 1 7 8730
50 % 1 7 7965
40 % 1 7 7323
30 % 19 39 411
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 15959
95 % 1 6 10225
90 % 1 6 10093
70 % 1 6 9564
50 % 1 6 8680
40 % 1 6 7949
30 % 1 6 7024
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 11204
95 % 1 6 10910
90 % 1 6 10757
70 % 1 6 10171
50 % 1 6 9158
40 % 1 6 8336
30 % 1 6 7310
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 13370
95 % 1 6 10752
90 % 1 6 10602
70 % 1 6 10032
50 % 1 6 9047
40 % 1 6 8246
30 % 1 6 7247
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24206
95 % 1 6 10878
90 % 1 6 10725
70 % 1 6 10141
50 % 1 6 9134
40 % 1 6 8318
30 % 1 6 7296
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 11211
95 % 1 6 10917
90 % 1 6 10762
70 % 1 6 10175
50 % 1 6 9161
40 % 1 6 8338
30 % 1 6 7312
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 13084
95 % 1 5 12458
90 % 1 5 12262
70 % 1 5 11552
50 % 1 5 10346
40 % 1 5 9413
30 % 1 5 8227
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 10810
95 % 1 6 10594
90 % 1 6 10448
70 % 1 6 9891
50 % 1 6 8932
40 % 1 6 8150
30 % 1 6 7177

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.