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An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 15336
95% 1 4 13781
90% 1 4 13528
70% 1 4 12674
50% 1 4 11217
40% 1 4 10129
30% 1 4 8771
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 24344
95% 1 3 17122
90% 1 3 16682
70% 1 3 15467
50% 1 3 13584
40% 1 3 12216
30% 1 3 10540
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51100
95% 1 1 35746
90% 1 1 34137
70% 1 1 30346
50% 1 1 26071
40% 1 1 23098
30% 1 1 19636
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21744
95% 1 4 14376
90% 1 4 14106
70% 1 4 13211
50% 1 4 11618
40% 1 4 10445
30% 19 36 387
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 26932
95% 1 3 17559
90% 1 3 17109
70% 1 3 15861
50% 1 3 13921
40% 1 3 12522
30% 1 3 10795
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21782
95% 1 3 18323
90% 1 3 17835
70% 1 3 16509
50% 1 3 14465
40% 1 3 12986
30% 1 3 11146
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30337
95% 1 3 18148
90% 1 3 17670
70% 1 3 16368
50% 1 3 14350
40% 1 3 12885
30% 1 3 11078
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31001
95% 1 3 18298
90% 1 3 17812
70% 1 3 16491
50% 1 3 14450
40% 1 3 12972
30% 1 3 11133
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21792
95% 1 3 18331
90% 1 3 17841
70% 1 3 16512
50% 1 3 14467
40% 1 3 12988
30% 1 3 11148
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20759
95% 1 3 17660
90% 1 3 17209
70% 1 3 15949
50% 1 3 13994
40% 1 3 12584
30% 1 3 10845
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21227
95% 1 3 17944
90% 1 3 17480
70% 1 3 16198
50% 1 3 14203
40% 1 3 12762
30% 1 3 10984
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.