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Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20417
95% 1 3 17275
90% 1 3 16832
70% 1 3 15590
50% 1 3 13666
40% 1 3 12287
30% 1 3 10590
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 38805
95% 1 2 19547
90% 1 2 18949
70% 1 2 17433
50% 1 2 15284
40% 1 2 13705
30% 1 2 11827
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49227
95% 1 1 34446
90% 1 1 32924
70% 1 1 29359
50% 1 1 25243
40% 1 1 22370
30% 1 1 19033
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 29820
95% 1 3 17641
90% 1 3 17178
70% 1 3 15902
50% 1 3 13937
40% 1 3 12517
30% 19 35 373
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41549
95% 1 2 20910
90% 1 2 20268
70% 1 2 18579
50% 1 2 16174
40% 1 2 14443
30% 1 2 12400
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30029
95% 1 2 23296
90% 1 2 22567
70% 1 2 20570
50% 1 2 17787
40% 1 2 15758
30% 1 2 13393
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45014
95% 1 2 22820
90% 1 2 22108
70% 1 2 20179
50% 1 2 17466
40% 1 2 15489
30% 1 2 13172
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45752
95% 1 2 23178
90% 1 2 22453
70% 1 2 20474
50% 1 2 17709
40% 1 2 15688
30% 1 2 13335
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30068
95% 1 2 23320
90% 1 2 22591
70% 1 2 20591
50% 1 2 17806
40% 1 2 15774
30% 1 2 13407
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 26492
95% 1 2 21279
90% 1 2 20627
70% 1 2 18894
50% 1 2 16442
40% 1 2 14639
30% 1 2 12542
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28190
95% 1 2 22259
90% 1 2 21569
70% 1 2 19694
50% 1 2 17084
40% 1 2 15165
30% 1 2 12925
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.