Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 4353
95 % 1 10 5149
90 % 1 10 5172
70 % 1 10 5066
50 % 1 10 4856
40 % 1 10 4592
30 % 1 10 4206
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10148
95 % 1 8 8249 Flexibility: High
Max RMSD: 22.1, Avg RMSD: 14.0
PDBFlex
90 % 1 8 8197
70 % 1 8 7921
50 % 1 8 7299
40 % 1 8 6787
30 % 1 8 6054
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63526
95 % 1 1 44243
90 % 1 1 41988
70 % 1 1 36909
50 % 1 1 31438
40 % 1 1 27729
30 % 1 1 23518
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 5103
95 % 1 10 5189 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 1 10 5212
70 % 1 10 5110
50 % 1 10 4888
40 % 1 10 4623
30 % 19 42 489
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 18369
95 % 1 9 5547 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 1 9 5565
70 % 1 9 5483
50 % 1 9 5198
40 % 1 9 4905
30 % 1 9 4465
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 5115
95 % 1 9 5829 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 9 5844
70 % 1 9 5725
50 % 1 9 5395
40 % 1 9 5073
30 % 1 9 4584
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7269
95 % 1 9 5768 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 1 9 5783
70 % 1 9 5674
50 % 1 9 5355
40 % 1 9 5036
30 % 1 9 4564
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27584
95 % 1 9 5820 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 9 5834
70 % 1 9 5717
50 % 1 9 5387
40 % 1 9 5068
30 % 1 9 4581
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 5118
95 % 1 9 5831
90 % 1 9 5847
70 % 1 9 5729
50 % 1 9 5400
40 % 1 9 5076
30 % 1 9 4587
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10325
95 % 1 7 10353 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 1 7 10227
70 % 1 7 9714
50 % 1 7 8810
40 % 1 7 8071
30 % 1 7 7123
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 4976
95 % 1 9 5712 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.5
PDBFlex
90 % 1 9 5731
70 % 1 9 5630
50 % 1 9 5317
40 % 1 9 4996
30 % 1 9 4538

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures