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Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20557
95% 1 3 17374
90% 1 3 16929
70% 1 3 15674
50% 1 3 13746
40% 1 3 12354
30% 1 3 10646
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39072
95% 1 2 19657
90% 1 2 19053
70% 1 2 17526
50% 1 2 15374
40% 1 2 13779
30% 1 2 11888
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49560
95% 1 1 34662
90% 1 1 33132
70% 1 1 29544
50% 1 1 25410
40% 1 1 22511
30% 1 1 19154
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30029
95% 1 3 17741
90% 1 3 17275
70% 1 3 15986
50% 1 3 14018
40% 1 3 12586
30% 19 35 377
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41845
95% 1 2 21032
90% 1 2 20384
70% 1 2 18682
50% 1 2 16268
40% 1 2 14521
30% 1 2 12465
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30238
95% 1 2 23438
90% 1 2 22702
70% 1 2 20693
50% 1 2 17895
40% 1 2 15847
30% 1 2 13465
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45326
95% 1 2 22960
90% 1 2 22241
70% 1 2 20300
50% 1 2 17573
40% 1 2 15577
30% 1 2 13243
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46072
95% 1 2 23319
90% 1 2 22587
70% 1 2 20596
50% 1 2 17816
40% 1 2 15776
30% 1 2 13406
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30278
95% 1 2 23462
90% 1 2 22726
70% 1 2 20714
50% 1 2 17914
40% 1 2 15863
30% 1 2 13479
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 26674
95% 1 2 21405
90% 1 2 20747
70% 1 2 19001
50% 1 2 16540
40% 1 2 14720
30% 1 2 12608
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28387
95% 1 2 22395
90% 1 2 21698
70% 1 2 19811
50% 1 2 17189
40% 1 2 15251
30% 1 2 12994
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.