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Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19654
95% 1 3 16694
90% 1 3 16283
70% 1 3 15092
50% 1 3 13247
40% 1 3 11906
30% 1 3 10283
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37383
95% 1 2 18887
90% 1 2 18329
70% 1 2 16849
50% 1 2 14795
40% 1 2 13270
30% 1 2 11475
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47417
95% 1 1 33246
90% 1 1 31803
70% 1 1 28420
50% 1 1 24482
40% 1 1 21688
30% 1 1 18468
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28685
95% 1 3 17047
90% 1 3 16613
70% 1 3 15382
50% 1 3 13499
40% 1 3 12123
30% 19 35 349
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40009
95% 1 2 20186
90% 1 2 19586
70% 1 2 17939
50% 1 2 15651
40% 1 2 13974
30% 1 2 12019
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28887
95% 1 2 22474
90% 1 2 21794
70% 1 2 19861
50% 1 2 17216
40% 1 2 15245
30% 1 2 12970
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43334
95% 1 2 22029
90% 1 2 21363
70% 1 2 19489
50% 1 2 16911
40% 1 2 14993
30% 1 2 12762
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44038
95% 1 2 22364
90% 1 2 21686
70% 1 2 19771
50% 1 2 17142
40% 1 2 15180
30% 1 2 12917
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28924
95% 1 2 22496
90% 1 2 21816
70% 1 2 19881
50% 1 2 17234
40% 1 2 15260
30% 1 2 12983
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 25508
95% 1 2 20544
90% 1 2 19934
70% 1 2 18244
50% 1 2 15912
40% 1 2 14162
30% 1 2 12153
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 27122
95% 1 2 21483
90% 1 2 20835
70% 1 2 19008
50% 1 2 16533
40% 1 2 14672
30% 1 2 12519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.