POP-OUT | CLOSE
 
Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19575
95% 1 3 16628
90% 1 3 16220
70% 1 3 15041
50% 1 3 13207
40% 1 3 11868
30% 1 3 10256
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37247
95% 1 2 18820
90% 1 2 18265
70% 1 2 16799
50% 1 2 14757
40% 1 2 13238
30% 1 2 11450
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47252
95% 1 1 33144
90% 1 1 31703
70% 1 1 28339
50% 1 1 24420
40% 1 1 21634
30% 1 1 18424
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28576
95% 1 3 16980
90% 1 3 16549
70% 1 3 15331
50% 1 3 13459
40% 1 3 12085
30% 19 35 348
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39864
95% 1 2 20112
90% 1 2 19515
70% 1 2 17883
50% 1 2 15607
40% 1 2 13935
30% 1 2 11990
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28778
95% 1 2 22392
90% 1 2 21716
70% 1 2 19798
50% 1 2 17166
40% 1 2 15198
30% 1 2 12935
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43176
95% 1 2 21948
90% 1 2 21285
70% 1 2 19426
50% 1 2 16860
40% 1 2 14946
30% 1 2 12727
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43878
95% 1 2 22282
90% 1 2 21608
70% 1 2 19708
50% 1 2 17092
40% 1 2 15133
30% 1 2 12882
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28815
95% 1 2 22414
90% 1 2 21738
70% 1 2 19818
50% 1 2 17184
40% 1 2 15213
30% 1 2 12948
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 25411
95% 1 2 20470
90% 1 2 19863
70% 1 2 18188
50% 1 2 15867
40% 1 2 14122
30% 1 2 12123
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 27014
95% 1 2 21401
90% 1 2 20756
70% 1 2 18945
50% 1 2 16482
40% 1 2 14625
30% 1 2 12484
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.