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Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20740
95% 1 3 17538
90% 1 3 17091
70% 1 3 15861
50% 1 3 13914
40% 1 3 12505
30% 1 3 10774
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39554
95% 1 2 19869
90% 1 2 19266
70% 1 2 17735
50% 1 2 15551
40% 1 2 13934
30% 1 2 12019
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50115
95% 1 1 35085
90% 1 1 33518
70% 1 1 29826
50% 1 1 25641
40% 1 1 22715
30% 1 1 19322
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30353
95% 1 3 17908
90% 1 3 17440
70% 1 3 16169
50% 1 3 14180
40% 1 3 12732
30% 19 35 378
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42365
95% 1 2 21261
90% 1 2 20614
70% 1 2 18901
50% 1 2 16451
40% 1 2 14681
30% 1 2 12600
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30563
95% 1 2 23708
90% 1 2 22965
70% 1 2 20922
50% 1 2 18078
40% 1 2 16006
30% 1 2 13600
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45863
95% 1 2 23216
90% 1 2 22493
70% 1 2 20526
50% 1 2 17757
40% 1 2 15738
30% 1 2 13381
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46608
95% 1 2 23590
90% 1 2 22851
70% 1 2 20826
50% 1 2 18000
40% 1 2 15936
30% 1 2 13542
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30603
95% 1 2 23732
90% 1 2 22989
70% 1 2 20943
50% 1 2 18097
40% 1 2 16022
30% 1 2 13614
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 26940
95% 1 2 21637
90% 1 2 20980
70% 1 2 19224
50% 1 2 16725
40% 1 2 14880
30% 1 2 12745
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28682
95% 1 2 22645
90% 1 2 21947
70% 1 2 20038
50% 1 2 17374
40% 1 2 15412
30% 1 2 13132
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.