POP-OUT | CLOSE

An Information Portal to 109822 Biological Macromolecular Structures

Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20967
95% 1 3 17722
90% 1 3 17275
70% 1 3 16020
50% 1 3 14044
40% 1 3 12621
30% 1 3 10871
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39976
95% 1 2 20084
90% 1 2 19476
70% 1 2 17910
50% 1 2 15691
40% 1 2 14059
30% 1 2 12124
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50636
95% 1 1 35438
90% 1 1 33848
70% 1 1 30099
50% 1 1 25864
40% 1 1 22918
30% 1 1 19499
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30689
95% 1 3 18097
90% 1 3 17628
70% 1 3 16332
50% 1 3 14312
40% 1 3 12849
30% 19 35 380
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42819
95% 1 2 21497
90% 1 2 20845
70% 1 2 19098
50% 1 2 16609
40% 1 2 14822
30% 1 2 12718
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30898
95% 1 2 23951
90% 1 2 23201
70% 1 2 21120
50% 1 2 18237
40% 1 2 16148
30% 1 2 13722
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46348
95% 1 2 23466
90% 1 2 22736
70% 1 2 20729
50% 1 2 17921
40% 1 2 15885
30% 1 2 13505
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47097
95% 1 2 23836
90% 1 2 23090
70% 1 2 21026
50% 1 2 18162
40% 1 2 16081
30% 1 2 13665
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30940
95% 1 2 23976
90% 1 2 23226
70% 1 2 21142
50% 1 2 18256
40% 1 2 16164
30% 1 2 13736
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 27254
95% 1 2 21875
90% 1 2 21213
70% 1 2 19422
50% 1 2 16884
40% 1 2 15023
30% 1 2 12866
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 29019
95% 1 2 22894
90% 1 2 22189
70% 1 2 20241
50% 1 2 17539
40% 1 2 15560
30% 1 2 13258
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.