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Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA
Sequence Clustering and Redundancy Reduction Results
4IFD
Sequence Clusters for the Sequence Entities in PDB 4IFD
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 304 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20824
95% 1 3 17598
90% 1 3 17152
70% 1 3 15919
50% 1 3 13959
40% 1 3 12545
30% 1 3 10805
Entity #10: Chains: J - Exosome complex exonuclease DIS3 protein, length: 1003 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39692
95% 1 2 19937
90% 1 2 19335
70% 1 2 17799
50% 1 2 15604
40% 1 2 13980
30% 1 2 12056
Entity #11: Chains: K - Exosome complex exonuclease RRP6 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50289
95% 1 1 35204
90% 1 1 33626
70% 1 1 29917
50% 1 1 25713
40% 1 1 22776
30% 1 1 19372
Entity #12: Chains: R - RNA (45-MER) rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30473
95% 1 3 17969
90% 1 3 17502
70% 1 3 16230
50% 1 3 14228
40% 1 3 12774
30% 19 35 379
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 393 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42511
95% 1 2 21335
90% 1 2 20689
70% 1 2 18971
50% 1 2 16510
40% 1 2 14732
30% 1 2 12641
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30683
95% 1 2 23793
90% 1 2 23050
70% 1 2 20996
50% 1 2 18140
40% 1 2 16060
30% 1 2 13642
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 267 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46025
95% 1 2 23301
90% 1 2 22578
70% 1 2 20600
50% 1 2 17821
40% 1 2 15794
30% 1 2 13424
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46772
95% 1 2 23675
90% 1 2 22936
70% 1 2 20900
50% 1 2 18064
40% 1 2 15992
30% 1 2 13585
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30724
95% 1 2 23818
90% 1 2 23075
70% 1 2 21018
50% 1 2 18159
40% 1 2 16076
30% 1 2 13656
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 361 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 27054
95% 1 2 21714
90% 1 2 21058
70% 1 2 19297
50% 1 2 16787
40% 1 2 14935
30% 1 2 12789
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 301 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28802
95% 1 2 22727
90% 1 2 22029
70% 1 2 20112
50% 1 2 17438
40% 1 2 15468
30% 1 2 13177
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.