POP-OUT | CLOSE
 
Human apurinic/apyrimidinic endonuclease (APE1) with product DNA and Mg2+
Sequence Clustering and Redundancy Reduction Results
4IEM
Sequence Clusters for the Sequence Entities in PDB 4IEM
Entity #1: Chains: A,B,C,D - DNA-(apurinic or apyrimidinic site) lyase protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 2046
95% 7 11 1444
90% 7 11 1489
70% 8 12 1326
50% 8 12 1402
40% 20 35 596
30% 24 39 536
Entity #2: Chains: E,H,K,N - DNA (5'-D(*GP*CP*TP*AP*C)-3') dna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: F,I,L,O - DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3') dna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: G,J,M,P - DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') dna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.