Sequence Similarity Clusters for the Entities in PDB 4IEM

Entity #1 | Chains: A,B,C,D
DNA-(apurinic or apyrimidinic site) lyase protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 1432
95 % 16 20 1263
90 % 16 20 1293
70 % 17 21 1216
50 % 18 22 1240
40 % 32 47 656
30 % 36 52 603
Entity #2 | Chains: E,H,K,N
DNA (5'-D(*GP*CP*TP*AP*C)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: F,I,L,O
DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,J,M,P
DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.