Sequence Similarity Clusters for the Entities in PDB 4IDU

Entity #1 | Chains: A,C,D
SBV nucleoprotein protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 3800
95 % 3 5 4596 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 3.0
PDBFlex
90 % 3 5 4626
70 % 3 5 4539
50 % 5 7 2779
40 % 9 11 1480
30 % 9 11 1463
Entity #2 | Chains: B
SBV nucleoprotein protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 3800
95 % 4 5 4596 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 3.0
PDBFlex
90 % 4 5 4626
70 % 4 5 4539
50 % 6 7 2779
40 % 10 11 1480
30 % 10 11 1463

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures