Sequence Similarity Clusters for the Entities in PDB 4IDU

Entity #1 | Chains: A,C,D
SBV nucleoprotein protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 3465
95 % 3 5 4240 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 3.0
PDBFlex
90 % 3 5 4260
70 % 3 5 4180
50 % 5 7 2567
40 % 9 11 1403
30 % 9 11 1374
Entity #2 | Chains: B
SBV nucleoprotein protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 3465
95 % 4 5 4240 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 3.0
PDBFlex
90 % 4 5 4260
70 % 4 5 4180
50 % 6 7 2567
40 % 10 11 1403
30 % 10 11 1374

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.