Sequence Similarity Clusters for the Entities in PDB 4IDK

Entity #1 | Chains: A
Reverse transcriptase/ribonuclease H protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 37 1086
95 % 9 255 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 9 255 96
70 % 9 255 113
50 % 9 256 151
40 % 9 257 164
30 % 9 257 176
Entity #2 | Chains: B
p51 RT protein, length: 429 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 105 208
95 % 9 249 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 9 249 120
70 % 9 249 135
50 % 9 251 160
40 % 9 251 175
30 % 9 251 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures