Sequence Similarity Clusters for the Entities in PDB 4I9W

Entity #1 | Chains: A,B
Potassium channel subfamily K member 4 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19289
95 % 3 8 4053 Flexibility: Medium
Max RMSD: 13.8, Avg RMSD: 5.5
PDBFlex
90 % 3 8 4090
70 % 3 8 4029
50 % 3 11 2767
40 % 3 11 2725
30 % 3 11 2554
Entity #2 | Chains: D,F
ANTIBODY FAB FRAGMENT LIGHT CHAIN protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6480
95 % 9 22 1616 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 56 145 144
70 % 1437 2329 1
50 % 2920 4717 1
40 % 2920 4717 1
30 % 3393 5571 1
Entity #3 | Chains: E,G
ANTIBODY FAB FRAGMENT HEAVY CHAIN protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6458
95 % 3 5 7067 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 9 17 831
70 % 1411 2282 2
50 % 2921 4717 1
40 % 2921 4717 1
30 % 3394 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.