Sequence Similarity Clusters for the Entities in PDB 4I9W

Entity #1 | Chains: A,B
Potassium channel subfamily K member 4 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18654
95 % 3 8 3929 Flexibility: Medium
Max RMSD: 13.8, Avg RMSD: 4.9
PDBFlex
90 % 3 8 3963
70 % 3 8 3899
50 % 3 11 2692
40 % 3 11 2653
30 % 3 11 2486
Entity #2 | Chains: D,F
ANTIBODY FAB FRAGMENT LIGHT CHAIN protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6269
95 % 9 22 1562 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 56 145 141
70 % 1151 1841 2
50 % 2821 4537 1
40 % 2821 4537 1
30 % 3268 5342 1
Entity #3 | Chains: E,G
ANTIBODY FAB FRAGMENT HEAVY CHAIN protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6249
95 % 3 5 6833 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 9 17 811
70 % 1365 2197 1
50 % 2822 4537 1
40 % 2822 4537 1
30 % 3269 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.