Sequence Similarity Clusters for the Entities in PDB 4I78

Entity #1 | Chains: A,B
Hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 8640
95 % 2 2 8975 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 8898
70 % 2 2 8555
50 % 3 3 5869
40 % 265 330 17
30 % 273 338 27
Entity #2 | Chains: C,D
Hemagglutinin HA2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43504
95 % 2 2 9675 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 2 2 9566
70 % 139 174 31
50 % 262 325 10
40 % 266 335 16
30 % 266 335 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures