Sequence Similarity Clusters for the Entities in PDB 4I78

Entity #1 | Chains: A,B
Hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10421
95 % 2 2 10127 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 9996
70 % 2 2 9505
50 % 3 3 6096
40 % 276 345 16
30 % 284 353 29
Entity #2 | Chains: C,D
Hemagglutinin HA2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34125
95 % 2 2 10041 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 2 2 9915
70 % 140 176 32
50 % 273 337 11
40 % 277 347 17
30 % 281 353 31

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures