Sequence Similarity Clusters for the Entities in PDB 4I78

Entity #1 | Chains: A,B
Hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 8355
95 % 2 2 8719 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 8653
70 % 2 2 8337
50 % 3 3 5706
40 % 258 321 16
30 % 265 328 25
Entity #2 | Chains: C,D
Hemagglutinin HA2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42256
95 % 2 2 9404 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 2 2 9303
70 % 134 168 42
50 % 257 319 10
40 % 261 329 15
30 % 261 329 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.