Sequence Similarity Clusters for the Entities in PDB 4I78

Entity #1 | Chains: A,B
Hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 8473
95 % 2 2 8838 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 8761
70 % 2 2 8427
50 % 3 3 5778
40 % 263 328 17
30 % 270 335 27
Entity #2 | Chains: C,D
Hemagglutinin HA2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42793
95 % 2 2 9525 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 2 2 9414
70 % 138 173 30
50 % 261 324 10
40 % 265 334 16
30 % 265 334 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures