Sequence Similarity Clusters for the Entities in PDB 4I78

Entity #1 | Chains: A,B
Hemagglutinin HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 8802
95 % 2 2 9126 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 9047
70 % 2 2 8687
50 % 3 3 5946
40 % 275 340 17
30 % 283 348 27
Entity #2 | Chains: C,D
Hemagglutinin HA2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44085
95 % 2 2 9835 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 2 2 9723
70 % 140 175 30
50 % 272 335 10
40 % 276 345 16
30 % 276 345 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures