Sequence Similarity Clusters for the Entities in PDB 4I6L

Entity #1 | Chains: A
Ubiquitin thioesterase OTUB1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59671
95 % 2 3 9247 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 3 9153
70 % 2 3 8772
50 % 2 3 7943
40 % 4 5 5462
30 % 4 5 4904
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71993
95 % 1 1 49912
90 % 234 423 6
70 % 249 446 8
50 % 256 467 11
40 % 269 491 15
30 % 517 1043 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.