Sequence Similarity Clusters for the Entities in PDB 4I6L

Entity #1 | Chains: A
Ubiquitin thioesterase OTUB1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58163
95 % 2 3 9016 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 3 8934
70 % 2 3 8547
50 % 2 3 7743
40 % 4 5 5306
30 % 4 5 4768
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70088
95 % 1 1 48554
90 % 224 400 6
70 % 237 420 8
50 % 244 441 12
40 % 257 465 17
30 % 502 1012 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.