Sequence Similarity Clusters for the Entities in PDB 4I6L

Entity #1 | Chains: A
Ubiquitin thioesterase OTUB1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59004
95 % 2 3 9137 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 3 9051
70 % 2 3 8690
50 % 2 3 7863
40 % 4 5 5395
30 % 4 5 4845
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71205
95 % 1 1 49392
90 % 230 410 6
70 % 243 430 8
50 % 250 451 12
40 % 263 475 17
30 % 511 1026 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.