Sequence Similarity Clusters for the Entities in PDB 4I6L

Entity #1 | Chains: A
Ubiquitin thioesterase OTUB1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65254
95 % 2 3 10534 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 3 10389
70 % 2 3 9821
50 % 2 3 8861
40 % 4 5 5744
30 % 4 5 5056
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65255
95 % 1 1 52881
90 % 245 434 6
70 % 265 467 8
50 % 272 488 10
40 % 285 515 15
30 % 345 673 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures