Sequence Similarity Clusters for the Entities in PDB 4I6L

Entity #1 | Chains: A
Ubiquitin thioesterase OTUB1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60239
95 % 2 3 9327 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 3 9233
70 % 2 3 8849
50 % 2 3 8018
40 % 4 5 5516
30 % 4 5 4949
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72639
95 % 1 1 50327
90 % 234 423 6
70 % 249 446 8
50 % 256 467 11
40 % 269 491 16
30 % 518 1044 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures