Sequence Similarity Clusters for the Entities in PDB 4I55

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 83 160
95 % 18 158 79 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 18 159 82
70 % 18 166 99
50 % 18 166 136
40 % 35 330 34
30 % 35 340 48
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 53 265
95 % 18 154 81 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 18 159 81
70 % 18 164 98
50 % 18 164 135
40 % 36 330 34
30 % 36 340 48
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 59 632
95 % 12 72 653 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 12 72 679
70 % 12 72 727
50 % 12 72 775
40 % 12 72 807
30 % 12 72 798
Entity #4 | Chains: F
Tubulin tyrosine ligase, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 54 681
95 % 11 54 931 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 1.0
PDBFlex
90 % 11 54 964
70 % 11 57 923
50 % 11 57 975
40 % 11 57 998
30 % 11 57 970

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.