Sequence Similarity Clusters for the Entities in PDB 4I55

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 103 110
95 % 21 181 71 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 21 182 74
70 % 21 190 88
50 % 21 190 117
40 % 41 378 25
30 % 41 388 43
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 71 203
95 % 21 177 72 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 21 182 71
70 % 21 188 87
50 % 21 188 116
40 % 42 378 25
30 % 42 388 43
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 75 456
95 % 15 88 519 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 15 88 548
70 % 15 88 576
50 % 15 88 615
40 % 15 88 654
30 % 15 88 639
Entity #4 | Chains: F
Tubulin tyrosine ligase, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 72 482
95 % 14 72 667 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.9
PDBFlex
90 % 14 72 696
70 % 14 75 696
50 % 14 75 748
40 % 14 75 779
30 % 14 75 778

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures