Sequence Similarity Clusters for the Entities in PDB 4I55

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 129 103
95 % 22 191 67 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 22 192 72
70 % 22 200 82
50 % 22 200 113
40 % 43 398 26
30 % 43 408 41
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 164 88
95 % 22 187 69 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 22 192 69
70 % 22 198 80
50 % 22 198 111
40 % 44 398 26
30 % 44 408 41
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 71 559
95 % 16 92 491 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.0
PDBFlex
90 % 16 92 527
70 % 16 92 563
50 % 16 93 595
40 % 16 93 635
30 % 16 93 635
Entity #4 | Chains: F
Tubulin tyrosine ligase, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 76 505
95 % 15 76 631 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.8
PDBFlex
90 % 15 76 656
70 % 15 79 668
50 % 15 79 720
40 % 15 79 747
30 % 15 79 756

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures