Sequence Similarity Clusters for the Entities in PDB 4I55

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 70 170
95 % 16 139 108 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 16 139 113
70 % 16 143 124
50 % 16 143 151
40 % 31 284 49
30 % 31 292 66
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 40 382
95 % 16 134 112 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 16 139 111
70 % 16 141 123
50 % 16 141 150
40 % 32 284 49
30 % 32 292 66
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 53 678
95 % 12 66 702 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 12 66 736
70 % 12 66 784
50 % 12 66 833
40 % 12 66 867
30 % 12 66 850
Entity #4 | Chains: F
Tubulin tyrosine ligase, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 45 801
95 % 11 45 1104 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 1.0
PDBFlex
90 % 11 45 1127
70 % 11 48 1065
50 % 11 48 1102
40 % 11 48 1120
30 % 11 48 1103

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.