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Peptide length determines the outcome of T cell receptor/peptide-MHCI engagement
Sequence Clustering and Redundancy Reduction Results
4I4W
Sequence Clusters for the Sequence Entities in PDB 4I4W
Entity #1: Chains: A - HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 141 31
95% 35 186 26
90% 39 215 22
70% 84 520 7
50% 84 525 7
40% 86 553 10
30% 86 575 15
Entity #2: Chains: B - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 440 2
95% 83 468 3
90% 83 476 3
70% 96 675 5
50% 98 688 5
40% 98 688 6
30% 98 688 11
Entity #3: Chains: C - Immunogenic peptide protein, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.