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Peptide length determines the outcome of T cell receptor/peptide-MHCI engagement
Sequence Clustering and Redundancy Reduction Results
4I4W
Sequence Clusters for the Sequence Entities in PDB 4I4W
Entity #1: Chains: A - HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 142 30
95% 35 187 26
90% 39 217 22
70% 84 523 7
50% 84 528 7
40% 86 556 10
30% 86 578 15
Entity #2: Chains: B - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 442 2
95% 83 470 3
90% 83 478 3
70% 96 678 5
50% 98 691 5
40% 98 691 6
30% 98 691 11
Entity #3: Chains: C - Immunogenic peptide protein, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.