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Peptide length determines the outcome of T cell receptor/peptide-MHCI engagement
Sequence Clustering and Redundancy Reduction Results
4I4W
Sequence Clusters for the Sequence Entities in PDB 4I4W
Entity #1: Chains: A - HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 152 31
95% 38 197 25
90% 42 229 21
70% 90 549 7
50% 90 554 7
40% 92 582 11
30% 98 683 13
Entity #2: Chains: B - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 468 2
95% 89 497 3
90% 89 505 3
70% 102 711 5
50% 104 725 5
40% 104 725 7
30% 104 725 11
Entity #3: Chains: C - Immunogenic peptide protein, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.