POP-OUT | CLOSE

An Information Portal to 105906 Biological Macromolecular Structures

Peptide length determines the outcome of T cell receptor/peptide-MHCI engagement
Sequence Clustering and Redundancy Reduction Results
4I4W
Sequence Clusters for the Sequence Entities in PDB 4I4W
Entity #1: Chains: A - HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 152 31
95% 38 197 25
90% 42 229 20
70% 89 548 7
50% 89 553 7
40% 91 581 10
30% 91 603 15
Entity #2: Chains: B - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 463 2
95% 88 492 3
90% 88 500 3
70% 101 706 5
50% 103 720 5
40% 103 720 6
30% 103 720 11
Entity #3: Chains: C - Immunogenic peptide protein, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.