Sequence Similarity Clusters for the Entities in PDB 4I4T

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 103 110
95 % 2 181 71 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 2 182 75
70 % 2 190 89
50 % 2 190 117
40 % 3 378 25
30 % 3 388 43
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 71 204
95 % 2 177 72 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 2 182 71
70 % 2 188 88
50 % 2 188 116
40 % 4 378 25
30 % 4 388 43
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 75 458
95 % 2 88 521
90 % 2 88 550
70 % 2 88 578
50 % 2 88 616
40 % 2 88 655
30 % 2 88 641
Entity #4 | Chains: F
Tubulin Tyrosine ligase, TTL protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 72 483
95 % 2 72 670 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.9
PDBFlex
90 % 2 72 699
70 % 2 75 698
50 % 2 75 752
40 % 2 75 784
30 % 2 75 783

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures