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Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21
Sequence Clustering and Redundancy Reduction Results
4I3S
Sequence Clusters for the Sequence Entities in PDB 4I3S
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32833
95% 2 2 25062
90% 2 2 24113
70% 2 2 21793
50% 2 2 18808
40% 2 2 16634
30% 2 2 14121
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9736
95% 3 4 9552
90% 3 4 9437
70% 1327 1548 2
50% 2753 3210 1
40% 2754 3211 1
30% 3235 3793 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9898
95% 3 4 9682
90% 3 4 9550
70% 1158 1349 3
50% 2754 3210 1
40% 2755 3211 1
30% 3236 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.