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Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21
Sequence Clustering and Redundancy Reduction Results
4I3S
Sequence Clusters for the Sequence Entities in PDB 4I3S
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 33342
95% 2 2 25464
90% 2 2 24494
70% 2 2 22107
50% 2 2 19059
40% 2 2 16851
30% 2 2 14299
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9881
95% 3 4 9674
90% 3 4 9556
70% 1355 1590 2
50% 2810 3295 1
40% 2811 3296 1
30% 3301 3893 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10042
95% 3 4 9800
90% 3 4 9664
70% 1183 1388 3
50% 2811 3295 1
40% 2812 3296 1
30% 3302 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.