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Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21
Sequence Clustering and Redundancy Reduction Results
4I3S
Sequence Clusters for the Sequence Entities in PDB 4I3S
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32300
95% 2 2 24705
90% 2 2 23781
70% 2 2 21493
50% 2 2 18568
40% 2 2 16426
30% 2 2 13957
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9516
95% 3 4 9408
90% 3 4 9300
70% 1309 1524 2
50% 2717 3162 1
40% 2718 3163 1
30% 3193 3739 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9670
95% 3 4 9534
90% 3 4 9410
70% 1144 1330 3
50% 2718 3162 1
40% 2719 3163 1
30% 3194 3739 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.