Sequence Similarity Clusters for the Entities in PDB 4I3S

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43599
95 % 2 2 33003
90 % 2 2 31531
70 % 2 2 28118
50 % 2 2 23959
40 % 2 2 21075
30 % 2 2 17841
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 7490
95 % 3 5 8061
90 % 3 5 8004
70 % 1978 2424 2
50 % 4099 5011 1
40 % 4099 5011 1
30 % 4889 5941 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7550
95 % 3 5 8122 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 3 5 8057
70 % 2020 2474 1
50 % 4100 5011 1
40 % 4100 5011 1
30 % 4890 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures