POP-OUT | CLOSE
 
Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21
Sequence Clustering and Redundancy Reduction Results
4I3S
Sequence Clusters for the Sequence Entities in PDB 4I3S
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31371
95% 2 2 24034
90% 2 2 23148
70% 2 2 20925
50% 2 2 18100
40% 2 2 16009
30% 2 2 13600
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9242
95% 3 4 9160
90% 3 4 9060
70% 1275 1481 2
50% 2645 3072 1
40% 2646 3073 1
30% 3107 3633 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9396
95% 3 4 9288
90% 3 4 9173
70% 1113 1292 3
50% 2646 3072 1
40% 2647 3073 1
30% 3108 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.