Sequence Similarity Clusters for the Entities in PDB 4I3S

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38588
95 % 2 2 29270
90 % 2 2 28063
70 % 2 2 25211
50 % 2 2 21606
40 % 2 2 19008
30 % 2 2 16081
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 11663
95 % 3 4 11267
90 % 3 4 11109
70 % 1674 2010 1
50 % 3462 4154 1
40 % 3463 4155 1
30 % 4086 4901 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 11852
95 % 3 4 11411
90 % 3 4 11234
70 % 1433 1704 2
50 % 3463 4154 1
40 % 3464 4155 1
30 % 4087 4901 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.