Sequence Similarity Clusters for the Entities in PDB 4I3S

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 35771
95 % 2 2 27205
90 % 2 2 26102
70 % 2 2 23457
50 % 2 2 20158
40 % 2 2 17791
30 % 2 2 15071
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 10622
95 % 3 4 10356
90 % 3 4 10217
70 % 1511 1790 1
50 % 3118 3692 1
40 % 3119 3693 1
30 % 3665 4355 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 10797
95 % 3 4 10492
90 % 3 4 10334
70 % 1292 1526 3
50 % 3119 3692 1
40 % 3120 3693 1
30 % 3666 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.