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Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21
Sequence Clustering and Redundancy Reduction Results
4I3S
Sequence Clusters for the Sequence Entities in PDB 4I3S
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 34234
95% 2 2 26100
90% 2 2 25078
70% 2 2 22589
50% 2 2 19458
40% 2 2 17200
30% 2 2 14590
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10172
95% 3 4 9937
90% 3 4 9813
70% 1417 1672 1
50% 2931 3457 1
40% 2932 3458 1
30% 3448 4083 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10340
95% 3 4 10064
90% 3 4 9922
70% 1224 1445 3
50% 2932 3457 1
40% 2933 3458 1
30% 3449 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.