POP-OUT | CLOSE
 
Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21
Sequence Clustering and Redundancy Reduction Results
4I3S
Sequence Clusters for the Sequence Entities in PDB 4I3S
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31498
95% 2 2 24141
90% 2 2 23252
70% 2 2 21044
50% 2 2 18199
40% 2 2 16102
30% 2 2 13679
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9283
95% 3 4 9201
90% 3 4 9099
70% 1278 1486 2
50% 2651 3082 1
40% 2652 3083 1
30% 3113 3645 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9437
95% 3 4 9330
90% 3 4 9213
70% 1113 1293 3
50% 2652 3082 1
40% 2653 3083 1
30% 3114 3645 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.