Sequence Similarity Clusters for the Entities in PDB 4I3S

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43015
95 % 2 2 32584
90 % 2 2 31145
70 % 2 2 27789
50 % 2 2 23698
40 % 2 2 20846
30 % 2 2 17641
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13082
95 % 3 4 12576
90 % 3 4 12392
70 % 1933 2366 2
50 % 4006 4892 1
40 % 4006 4892 1
30 % 4734 5759 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13290
95 % 3 4 12742 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 3 4 12531
70 % 1975 2416 1
50 % 4007 4892 1
40 % 4007 4892 1
30 % 4735 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures