Sequence Similarity Clusters for the Entities in PDB 4I3R

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40296
95 % 1 2 30569
90 % 1 2 29285
70 % 1 2 26264
50 % 1 2 22471
40 % 1 2 19768
30 % 1 2 16731
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12194
95 % 2 4 11756
90 % 2 4 11584
70 % 1426 2145 1
50 % 2951 4435 1
40 % 2951 4435 1
30 % 3443 5225 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12392
95 % 2 4 11908
90 % 2 4 11715
70 % 1208 1803 2
50 % 2952 4435 1
40 % 2952 4435 1
30 % 3444 5225 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.