Sequence Similarity Clusters for the Entities in PDB 4I3R

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37024
95 % 1 2 28124
90 % 1 2 26968
70 % 1 2 24228
50 % 1 2 20803
40 % 1 2 18342
30 % 1 2 15521
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11085
95 % 2 4 10781
90 % 2 4 10626
70 % 1275 1894 1
50 % 2628 3902 1
40 % 2629 3903 1
30 % 3072 4631 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11266
95 % 2 4 10921
90 % 2 4 10748
70 % 1088 1609 3
50 % 2629 3902 1
40 % 2630 3903 1
30 % 3073 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.