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Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221
Sequence Clustering and Redundancy Reduction Results
4I3R
Sequence Clusters for the Sequence Entities in PDB 4I3R
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32367
95% 1 2 24754
90% 1 2 23824
70% 1 2 21533
50% 1 2 18598
40% 1 2 16451
30% 1 2 13977
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9539
95% 2 4 9426
90% 2 4 9318
70% 1046 1528 2
50% 2171 3170 1
40% 2172 3171 1
30% 2516 3753 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9693
95% 2 4 9553
90% 2 4 9429
70% 916 1332 3
50% 2172 3170 1
40% 2173 3171 1
30% 2517 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.