POP-OUT | CLOSE
 
Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221
Sequence Clustering and Redundancy Reduction Results
4I3R
Sequence Clusters for the Sequence Entities in PDB 4I3R
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31099
95% 1 2 23833
90% 1 2 22955
70% 1 2 20758
50% 1 2 17964
40% 1 2 15889
30% 1 2 13510
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9171
95% 2 4 9093
90% 2 4 8992
70% 1008 1461 2
50% 2090 3031 1
40% 2091 3032 1
30% 2422 3590 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9323
95% 2 4 9219
90% 2 4 9104
70% 880 1274 3
50% 2091 3031 1
40% 2092 3032 1
30% 2423 3590 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.