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Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221
Sequence Clustering and Redundancy Reduction Results
4I3R
Sequence Clusters for the Sequence Entities in PDB 4I3R
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 34234
95% 1 2 26100
90% 1 2 25078
70% 1 2 22589
50% 1 2 19458
40% 1 2 17200
30% 1 2 14590
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 10172
95% 2 4 9937
90% 2 4 9813
70% 1134 1672 1
50% 2345 3457 1
40% 2346 3458 1
30% 2712 4083 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 10340
95% 2 4 10064
90% 2 4 9922
70% 977 1445 3
50% 2346 3457 1
40% 2347 3458 1
30% 2713 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.