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Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221
Sequence Clustering and Redundancy Reduction Results
4I3R
Sequence Clusters for the Sequence Entities in PDB 4I3R
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32044
95% 1 2 24531
90% 1 2 23612
70% 1 2 21346
50% 1 2 18456
40% 1 2 16330
30% 1 2 13880
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9445
95% 2 4 9342
90% 2 4 9233
70% 1040 1511 2
50% 2159 3136 1
40% 2160 3137 1
30% 2498 3713 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9597
95% 2 4 9468
90% 2 4 9345
70% 910 1317 3
50% 2160 3136 1
40% 2161 3137 1
30% 2499 3713 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.