Sequence Similarity Clusters for the Entities in PDB 4I3R

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41567
95 % 1 2 31539
90 % 1 2 30180
70 % 1 2 27000
50 % 1 2 23056
40 % 1 2 20281
30 % 1 2 17170
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12601
95 % 2 4 12151
90 % 2 4 11982
70 % 1467 2238 2
50 % 3033 4619 1
40 % 3033 4619 1
30 % 3545 5440 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12801
95 % 2 4 12308
90 % 2 4 12113
70 % 1495 2280 1
50 % 3034 4619 1
40 % 3034 4619 1
30 % 3546 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.