Sequence Similarity Clusters for the Entities in PDB 4I3R

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37592
95 % 1 2 28536
90 % 1 2 27366
70 % 1 2 24596
50 % 1 2 21099
40 % 1 2 18581
30 % 1 2 15731
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11302
95 % 2 4 10980
90 % 2 4 10825
70 % 1292 1932 1
50 % 2667 3985 1
40 % 2668 3986 1
30 % 3112 4715 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11487
95 % 2 4 11122
90 % 2 4 10951
70 % 1102 1639 3
50 % 2668 3985 1
40 % 2669 3986 1
30 % 3113 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.