Sequence Similarity Clusters for the Entities in PDB 4I3R

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37282
95 % 1 2 28301
90 % 1 2 27148
70 % 1 2 24396
50 % 1 2 20935
40 % 1 2 18450
30 % 1 2 15624
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11178
95 % 2 4 10868
90 % 2 4 10716
70 % 1280 1909 1
50 % 2639 3934 1
40 % 2640 3935 1
30 % 3083 4663 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11361
95 % 2 4 11010
90 % 2 4 10840
70 % 1090 1617 3
50 % 2640 3934 1
40 % 2641 3935 1
30 % 3084 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.