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Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221
Sequence Clustering and Redundancy Reduction Results
4I3R
Sequence Clusters for the Sequence Entities in PDB 4I3R
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 33092
95% 1 2 25274
90% 1 2 24319
70% 1 2 21958
50% 1 2 18945
40% 1 2 16756
30% 1 2 14225
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9791
95% 2 4 9602
90% 2 4 9487
70% 1072 1564 2
50% 2223 3242 1
40% 2224 3243 1
30% 2568 3827 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9954
95% 2 4 9730
90% 2 4 9597
70% 935 1361 3
50% 2224 3242 1
40% 2225 3243 1
30% 2569 3827 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.