POP-OUT | CLOSE
 
Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221
Sequence Clustering and Redundancy Reduction Results
4I3R
Sequence Clusters for the Sequence Entities in PDB 4I3R
Entity #1: Chains: G - Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31576
95% 1 2 24190
90% 1 2 23298
70% 1 2 21082
50% 1 2 18232
40% 1 2 16133
30% 1 2 13700
Entity #2: Chains: H - Heavy chain of VRC-PG04 Fab protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9312
95% 2 4 9218
90% 2 4 9116
70% 1028 1490 2
50% 2131 3090 1
40% 2132 3091 1
30% 2465 3653 1
Entity #3: Chains: L - Light chain of VRC-PG04 Fab protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9465
95% 2 4 9346
90% 2 4 9229
70% 897 1297 3
50% 2132 3090 1
40% 2133 3091 1
30% 2466 3653 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.