Sequence Similarity Clusters for the Entities in PDB 4I3R

Entity #1 | Chains: G
Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39076
95 % 1 2 29632
90 % 1 2 28405
70 % 1 2 25510
50 % 1 2 21855
40 % 1 2 19222
30 % 1 2 16257
Entity #2 | Chains: H
Heavy chain of VRC-PG04 Fab protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11809
95 % 2 4 11385
90 % 2 4 11227
70 % 1364 2041 1
50 % 2824 4220 1
40 % 2824 4221 1
30 % 3281 4972 1
Entity #3 | Chains: L
Light chain of VRC-PG04 Fab protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12001
95 % 2 4 11532
90 % 2 4 11354
70 % 1165 1729 2
50 % 2825 4220 1
40 % 2825 4221 1
30 % 3282 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.