Sequence Similarity Clusters for the Entities in PDB 4I2Q

Entity #1 | Chains: A
Gag-Pol polyprotein protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 11171
95 % 100 248 89 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 100 248 94
70 % 100 248 113
50 % 101 249 149
40 % 101 249 164
30 % 101 249 180
Entity #2 | Chains: B
Gag-Pol polyprotein protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 105 201
95 % 97 242 113 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 97 242 117
70 % 97 242 133
50 % 98 243 156
40 % 98 243 175
30 % 98 243 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.