Sequence Similarity Clusters for the Entities in PDB 4I2Q

Entity #1 | Chains: A
Gag-Pol polyprotein protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5294
95 % 106 257 113 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 106 257 118
70 % 106 257 131
50 % 107 258 162
40 % 107 259 172
30 % 107 259 191
Entity #2 | Chains: B
Gag-Pol polyprotein protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 118 218
95 % 103 251 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 103 251 122
70 % 103 251 139
50 % 104 253 168
40 % 104 253 182
30 % 104 253 203

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures