Sequence Similarity Clusters for the Entities in PDB 4I2Q

Entity #1 | Chains: A
Gag-Pol polyprotein protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 13 5357
95 % 128 280 109 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.7
PDBFlex
90 % 128 280 116
70 % 128 280 133
50 % 129 281 156
40 % 129 282 166
30 % 129 282 186
Entity #2 | Chains: B
Gag-Pol polyprotein protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 130 216
95 % 125 274 115 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 125 274 122
70 % 125 274 137
50 % 126 276 164
40 % 126 276 175
30 % 126 276 195

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures