Sequence Similarity Clusters for the Entities in PDB 4I2P

Entity #1 | Chains: A
Gag-Pol polyprotein protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 37 1104
95 % 32 257 110 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 32 257 114
70 % 32 257 128
50 % 33 258 156
40 % 33 259 167
30 % 33 259 177
Entity #2 | Chains: B
Gag-Pol polyprotein protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 107 208
95 % 32 251 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 32 251 122
70 % 32 251 137
50 % 33 253 164
40 % 33 253 175
30 % 33 253 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures