Sequence Similarity Clusters for the Entities in PDB 4I1O

Entity #1 | Chains: A,C,E,G
Ras-related protein Rab-1B protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 5351
95 % 8 17 1457 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.9
PDBFlex
90 % 9 19 1398
70 % 11 21 1336
50 % 61 85 288
40 % 390 478 21
30 % 630 817 16
Entity #2 | Chains: B,D,F,H
LepB protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10511
95 % 2 3 7026 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 2 3 7008
70 % 2 3 6835
50 % 2 3 6337
40 % 2 3 5931
30 % 2 4 4942

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures