Sequence Similarity Clusters for the Entities in PDB 4I1O

Entity #1 | Chains: A,C,E,G
Ras-related protein Rab-1B protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4960
95 % 7 16 1662 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.4
PDBFlex
90 % 8 18 1563
70 % 10 20 1482
50 % 60 84 279
40 % 344 424 27
30 % 576 750 16
Entity #2 | Chains: B,D,F,H
LepB protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9876
95 % 2 3 6581 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.4
PDBFlex
90 % 2 3 6567
70 % 2 3 6413
50 % 2 3 5967
40 % 2 3 5588
30 % 2 4 4662

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.