Sequence Similarity Clusters for the Entities in PDB 4I1O

Entity #1 | Chains: A,C,E,G
Ras-related protein Rab-1B protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 5221
95 % 8 17 1414 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.9
PDBFlex
90 % 9 19 1366
70 % 11 21 1308
50 % 61 85 274
40 % 366 451 21
30 % 600 782 16
Entity #2 | Chains: B,D,F,H
LepB protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10267
95 % 2 3 6871 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 2 3 6852
70 % 2 3 6692
50 % 2 3 6205
40 % 2 3 5806
30 % 2 4 4843

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.