Sequence Similarity Clusters for the Entities in PDB 4I1O

Entity #1 | Chains: A,C,E,G
Ras-related protein Rab-1B protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 5434
95 % 8 17 1472 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.9
PDBFlex
90 % 9 19 1419
70 % 11 21 1347
50 % 61 85 292
40 % 395 483 21
30 % 635 822 16
Entity #2 | Chains: B,D,F,H
LepB protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10690
95 % 2 3 7123 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 2 3 7110
70 % 2 3 6929
50 % 2 3 6425
40 % 2 3 6008
30 % 2 4 5005

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures