Sequence Similarity Clusters for the Entities in PDB 4HXD

Entity #1 | Chains: A,C
Polyubiquitin-C protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 318 4
95 % 248 393 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 266 420 6
70 % 282 443 8
50 % 289 464 11
40 % 302 488 16
30 % 577 1040 9
Entity #2 | Chains: B,D
RNA-directed RNA polymerase L protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42884
95 % 1 1 32464 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 31049
70 % 1 1 27722
50 % 11 11 3241
40 % 11 11 3154
30 % 11 11 2962

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.