Sequence Similarity Clusters for the Entities in PDB 4HXD

Entity #1 | Chains: A,C
Polyubiquitin-C protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 210 332 5
95 % 262 410 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 280 437 6
70 % 296 460 8
50 % 303 481 11
40 % 316 505 15
30 % 594 1062 9
Entity #2 | Chains: B,D
RNA-directed RNA polymerase L protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44344
95 % 1 1 33498 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 31991
70 % 1 1 28515
50 % 11 11 3372
40 % 11 11 3272
30 % 11 11 3070

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures