Sequence Similarity Clusters for the Entities in PDB 4HXD

Entity #1 | Chains: A,C
Polyubiquitin-C protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 254 401 4
95 % 271 425 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 282 438 6
70 % 304 471 8
50 % 311 492 10
40 % 324 518 15
30 % 404 685 18
Entity #2 | Chains: B,D
RNA-directed RNA polymerase L protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36727
95 % 1 1 31273 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29960
70 % 1 1 26867
50 % 11 11 3378
40 % 11 11 3251
30 % 11 11 3002

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures