Sequence Similarity Clusters for the Entities in PDB 4HWE

Entity #1 | Chains: H
Fab heavy chain protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48190
95 % 1 2 40029 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 23 41 1009
70 % 1036 2655 2
50 % 2144 5473 1
40 % 2467 6175 1
30 % 2997 7653 1
Entity #2 | Chains: L
Fab light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 42733
95 % 35 103 220 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 330 844 2
70 % 1044 2696 1
50 % 2145 5473 1
40 % 2468 6175 1
30 % 2998 7653 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6CA7 1 L PCT64_13C light chain 9606
2 5I1K 1 L FAB LIGHT CHAIN 9606
3 4JDV 2 B, L Fab light chain NIH45-46 Germ-line Light CHAIN, IG Kappa 9606
4 4HHA 1 A Fab KE5 Fab fragment KE5 9606
5 3EO0 1 A, C GC-1008 Fab Light Chain 10090
6 4DGV 2 L HCV1 Light Chain 9606
7 5IBU 1 B, L 6652 Light Chain 9606
8 4HH9 1 A, C Fab KE5, light chain KE5 Light chain 9606
9 4DGY 2 L HCV1 Light Chain 9606
10 2V7N 1 A, C, E, G IMMUNOGLOBULIN LIGHT CHAIN SYNTHETIC GENE, DERIVED FROM PHAGE DISPLAY OF THE HUMAN COMBINATORIAL ANTIBODY LIBRARY (HUCAL) FAB FRAGMENT, RESIDUES 1-255 32630
11 5CSZ 2 B, L GANTENERUMAB FAB FRAGMENT LIGHT CHAIN FAB 9606
12 5DR5 2 L AbD09097 Fab light chain 9606
13 3FN0 1 L Fab Z13e1 light chain 9606
14 6GHG 2 B, L Fab light chain 9606
15 5I16 1 A, L FAB LIGHT CHAIN 9606
16 4FQL 2 L monoclonal antibody CR8033 light chain Fab 9606
17 5GGQ 1 L nivolumab light chain 9606
18 5K9J 2 L 56.a.09 light chain 9606
19 5TF1 2 L O2-CC Fab Light Chain 9606
20 3SO3 2 B A11 FAB light chain 9606
21 4HIE 1 A Fab 023.102 9606
22 3QEG 2 L Fab fragment of human anti-HIV antibody N12-i2, light chain Fab light chain 9606
23 4JPI 2 B, L Putative VRC01 germline Fab light chain 9606
24 1IQD 1 A HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN 9606
25 6DFJ 2 L anti-Zika antibody Z021, Light Chain 9606
26 5I1A 1 A, L CNTO388 LIGHT CHAIN 9606
27 3X3F 2 L Light chain of KMTR2 9606
28 4HIH 1 A, C Fab 023.102 9606
29 5V7R 1 L CBTAU-7.1 Fab light chain 9606
30 1DN0 1 A, C IGM-KAPPA COLD AGGLUTININ (LIGHT CHAIN) FAB FRAGMENT 9606
31 3GIZ 1 L Fab fragment of anti-CD20 antibody Ofatumumab, light chain 9606
32 3Q1S 1 L Z13e1 Fab light chain 9606
33 4QXG 2 L Fab, light chain, IgG1 Fab, light chain 9606
34 3W9D 2 B, D Antibody Fab light chain 9606
35 4HWE 2 L Fab light chain light chain 9606
36 5TZ2 2 L C47B222 Fab Light Chain 9606
37 3W9E 3 B Antibody Fab light chain 9606
38 5TFS 2 L 02-K Fab Light chain 9606
39 5WT9 2 L Light Chain of Nivolumab 9606
40 4HIJ 1 A, C Fab 023.102 light chain 9606
41 5I1C 1 L FAB LIGHT CHAIN 9606
42 5WNA 2 D, L mAb 3D3 Fab light chain 9606
43 5KZP 2 I, J, K, L HCV1-C1 Antibody Fab Light Chain 9606
44 5I1H 1 L FAB LIGHT CHAIN 9606
45 6DFI 2 L anti-Zika antibody Z021, Light Chain 9606
46 5I1J 1 L FAB LIGHT CHAIN 9606
47 4JPK 2 L Putative VRC01 germline precursor Fab light chain 9606
48 3X3G 2 L Light chain of KMTR2 9606
49 5IBT 2 L UCA Light Chain 9606
50 5JO4 2 B D80 Fab Light Chain 9606
51 5X8M 3 C durvalumab light chain 9606
52 4HII 1 A, C Fab 023.102 light chain 9606
53 4DN3 1 L CNTO888 LIGHT CHAIN 9606
54 5WNB 2 L, M mAb 3D3 Fab light chain 9606
55 6MFT 2 B, L Light chain glVRC01 9606
56 4HWB 3 L Fab light chain 9606
57 6B0A 2 L 1269 antibody, light chain 9606
58 5JQD 1 A, B D80 Fab Fragment Light Chain 9606
59 4KXZ 3 I, L, M, P GC1008 Light Chain 9606
60 6CMI 2 C m102.3 light chain 9606
61 3EYQ 1 C M2J5 Fab 9606
62 3B2U 1 D, G, K, L, O, R, U, X IMC-11F8 Fab Light chain 9606
63 4DN4 1 L CNTO888 LIGHT CHAIN 9606
64 6MHR 2 B, E Urelumab Fab kappa chain 9606
65 5WI9 2 E, L 39F7 Fab light chain 9606
66 6B3S 3 D, G, K, L Necitumumab Fab Light chain 9606
67 3SDY 4 L Antibody CR8020, Light Chain 9606
68 4NP4 3 L, M bezlotoxumab light chain 9606
69 5GGT 3 L IGK@ protein 9606
70 3HI1 2 A, L F105 Light Chain 9606
71 6CMG 2 B m102.3 light chain 9606
72 1QLR 1 A, C IGM KAPPA CHAIN V-III (KAU COLD AGGLUTININ) FAB FRAGMENT 9606
73 5XMH 2 C, L YES8c light chain 9606
74 5I1G 1 L FAB LIGHT CHAIN 9606
75 5GMQ 3 C MCA1 light chain 9606
76 6CA9 1 A, C PCT64_LMCA Fab light chain 9606
77 5TRU 1 L, l Ipilimumab Fab light chain 9606
78 4YPG 1 A, L Sifalimumab light chain 9606
79 4UTA 3 L, M BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8 LIGHT CHAIN FAB FRAGMENT 9606
80 3KYM 1 A, C, E, G, I, K, M, O Light Chain Li33 IgG2 9606
81 4OQT 2 L Light Chain of Li81 Fab, kappa 3 9606
82 3KYK 2 L Light Chain Li33 IgG1 9606
83 5TGB 2 B, L 02-CB Fab Light Chain 9606
84 5JOF 2 B, D, F, L VRC03 gLV light chain 9606
85 1U6A 1 L F105 LIGHT CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
86 5K9K 2 B, L 56.a.09 Light chain 9606
87 5W4L 6 C, E Antibody N12-i3 light chain 9606
88 6B9J 3 B, L Fab vv138 Light chain 9606
89 5I17 1 A, L FAB LIGHT CHAIN 9606
90 5GGR 2 B, L light chain 9606
91 4N90 3 E, G, I Fab light chain 9606
92 5D1Q 4 D P5 Light Chain 9606
93 3EO1 1 A, D, G, J GC-1008 Fab Light Chain 10090
94 5UWE 2 L HUMAN ANTI-HIV ANTIBODY N12-I2 Fab LIGHT CHAIN 9606
95 5D1X 4 D P5 Light Chain 9606
96 5WKO 2 B, D, F, H, J, L Antibody 27F3 light chain 9606
97 3F12 1 A, C M2J1 Fab 9606
98 3B2V 1 L IMC-11F8 FAB Light chain 9606
99 5IGX 3 L germline NIH45-46 light chain 9606
100 5W1K 3 C, H, M, N CR1-10 Fab light chain 9606
101 6B3M 4 D, J, N, P, U, W 70-1F02 Fab Light Chain 9606
102 6MZJ 2 C, L VRC01GL light chain germline VK3-11 with the mature CDRL3 of VRC01 9606
103 6MYY 2 C, F, L VRC01GL light chain germline VK3-11 with the mature CDR L3 of VRC01 9606