Sequence Similarity Clusters for the Entities in PDB 4HUX

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28277
95 % 15 68 271 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 15 70 276
70 % 405 775 6
50 % 413 791 7
40 % 432 843 9
30 % 465 970 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 189 91
95 % 71 234 69 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 71 234 74
70 % 482 983 4
50 % 492 1007 3
40 % 492 1007 6
30 % 492 1007 9
Entity #3 | Chains: C
NP peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5M02 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
2 4L8D 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-304 10090
3 3WS6 1 A, B H-2 class I histocompatibility antigen, D-B alpha chain EXTRACELLULAR DOMAIN 10090
4 1WBX 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 25-300 10090
5 4HV8 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain 10090
6 5M01 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
7 5M00 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
8 4HUU 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
9 1JUF 1 A H2-Db major histocompatibility antigen extracellular domain 10090
10 3CC5 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain Extracellular part, UNP residues 25-300 10090
11 3QUL 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain UNP Residues 25-362 10090
12 5E8O 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
13 5E8P 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
14 2ZOK 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain extracellular domain, UNP residues 25-299 10090
15 4HUX 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
16 5WLG 1 A, F H-2 class I histocompatibility antigen, D-B alpha chain 10090
17 4L8B 1 A H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-304 10090
18 3TBV 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain RESIDUES 25-362 10090
19 1JPF 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN extracellular domains 10090
20 1YN6 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
21 5WLI 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain 10090
22 1INQ 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN 10090
23 1YN7 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
24 3TBW 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain RESIDUES 25-362 10090
25 1JPG 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN extracellular domains 10090
26 1HOC 1 A CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN) 10090
27 5JWD 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
28 5JWE 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain 10090
29 3WS3 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain EXTRACELLULAR DOMAIN 10090
30 5E8N 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain 10090
31 3CH1 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-300 10090
32 1WBY 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 25-300 10090
33 3TBT 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain RESIDUES 25-362 10090
34 4HUV 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
35 5MZM 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
36 1QLF 1 A MHC CLASS I H-2DB HEAVY CHAIN FORMS HETEROTRIMER WITH CHAIN B (BETA-2-MICROGLOBULIN) AND CHAIN C (PEPTIDE ANTIGEN) EXTRACELLULAR DOMAINS 10090
37 3CPL 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain residues 1-275 (UNIPROT 25-299) 10090
38 3QUK 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain UNP Residues 25-362 10090
39 3TBS 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain UNP RESIDUES 25-362 10090
40 4L8C 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-304 10090
41 4NSK 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
42 3FTG 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
43 2CII 1 A H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN RESIDUES 25-299 10090
44 5SWZ 1 A, F, K, P H-2 class I histocompatibility antigen, D-B alpha chain 10090
45 1ZHB 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain EXTRAcellular part 10090
46 2F74 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
47 3L3H 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
48 4PG2 1 A H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-299 10090
49 3CCH 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 25-300 10090
50 2VE6 1 A, D, G, J H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN RESIDUES 25-301 10090
51 3BUY 1 A H-2 class I histocompatibility antigen, D-B alpha chain residues 2-276 10090
52 4HUW 1 A, C, E, G H-2 class I histocompatibility antigen, D-B alpha chain 10090
53 1FFP 1 A, D H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN EXTRACELLULAR PORTION 10090
54 1FFO 1 A, D H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN EXTRACELLULAR PORTION 10090
55 5TIL 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain 10090
56 1FFN 1 A, D H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR PORTION 10090
57 1CE6 1 A PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN) FRAGMENT: EXTRACELLULAR DOMAINS 10090
58 1FG2 1 A, D, G, J H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR ALPHA CHAIN (1,2,3) 10090
59 5SWS 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090
60 2ZOL 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain extracellular domain, UNP residues 25-299 10090
61 3TBY 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain RESIDUES 25-362 10090
62 4IHO 1 A, D H-2 class I histocompatibility antigen, D-B alpha chain UNP RESIDUES 25-300 10090
63 1N5A 1 A, D, G, J H-2 class I histocompatibility antigen, D-B alpha chain Extracellular part 10090
64 1BZ9 1 A PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) 10090
65 1N3N 1 A, C, E, G H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN EXTRACELLULAR DOMAINS 10090
66 5TJE 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain 10090
67 3PQY 1 A, F, K, P H-2 class I histocompatibility antigen, D-B alpha chain UNP residues 26-300 10090
68 5OPI 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090