Sequence Similarity Clusters for the Entities in PDB 4HUX

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27226
95 % 15 68 259 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 15 70 266
70 % 388 746 6
50 % 394 760 7
40 % 413 812 9
30 % 446 939 13
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 189 81
95 % 71 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 71 234 66
70 % 465 953 4
50 % 473 975 3
40 % 473 975 6
30 % 473 975 9
Entity #3 | Chains: C
NP peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HV8 1 A, C H-2 class I histocompatibility antigen, D-B alpha chain 10090
2 4HUX 1 A H-2 class I histocompatibility antigen, D-B alpha chain 10090