Sequence Similarity Clusters for the Entities in PDB 4HUW

Entity #1 | Chains: A,C,E,G
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 66 220
95 % 52 68 275 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 53 70 280
70 % 687 777 6
50 % 700 793 7
40 % 736 845 9
30 % 828 983 12
Entity #2 | Chains: B,D,F,H
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 46 560
95 % 186 243 70 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 186 243 73
70 % 848 996 4
50 % 864 1020 3
40 % 864 1020 6
30 % 864 1020 10
Entity #3 | Chains: I,J,K,L
NPM6T variant peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures