Sequence Similarity Clusters for the Entities in PDB 4HUW

Entity #1 | Chains: A,C,E,G
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 66 208
95 % 52 68 260 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 53 70 266
70 % 660 746 5
50 % 671 760 6
40 % 707 812 8
30 % 790 939 12
Entity #2 | Chains: B,D,F,H
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 45 539
95 % 179 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 179 234 67
70 % 812 953 3
50 % 826 975 2
40 % 826 975 5
30 % 826 975 8
Entity #3 | Chains: I,J,K,L
NPM6T variant peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures