Sequence Similarity Clusters for the Entities in PDB 4HUW

Entity #1 | Chains: A,C,E,G
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 66 215
95 % 52 68 271 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 53 70 276
70 % 686 775 6
50 % 699 791 7
40 % 735 843 9
30 % 818 970 12
Entity #2 | Chains: B,D,F,H
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 45 556
95 % 179 234 69 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 179 234 74
70 % 838 983 4
50 % 854 1007 3
40 % 854 1007 6
30 % 854 1007 9
Entity #3 | Chains: I,J,K,L
NPM6T variant peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures