Sequence Similarity Clusters for the Entities in PDB 4HUW

Entity #1 | Chains: A,C,E,G
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 63 200
95 % 51 67 255 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 52 69 267
70 % 644 727 6
50 % 646 732 6
40 % 687 783 10
30 % 766 909 15
Entity #2 | Chains: B,D,F,H
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 92 212
95 % 177 230 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 177 230 66
70 % 789 924 4
50 % 803 946 3
40 % 803 946 7
30 % 803 946 12
Entity #3 | Chains: I,J,K,L
NPM6T variant peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures