Sequence Similarity Clusters for the Entities in PDB 4HUV

Entity #1 | Chains: A,D
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 55 205
95 % 29 59 265 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 30 61 271
70 % 486 679 6
50 % 487 684 6
40 % 522 734 10
30 % 564 851 15
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 79 249
95 % 118 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 118 215 68
70 % 594 870 4
50 % 606 892 4
40 % 606 892 8
30 % 606 892 14
Entity #3 | Chains: C,F
NPM6W variant peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.