Sequence Similarity Clusters for the Entities in PDB 4HUU

Entity #1 | Chains: A,D
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 56 207
95 % 5 60 266 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 5 62 275
70 % 269 705 6
50 % 269 710 6
40 % 285 761 10
30 % 307 881 15
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 87 229
95 % 47 223 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 47 223 66
70 % 330 898 4
50 % 335 920 3
40 % 335 920 8
30 % 335 920 12
Entity #3 | Chains: C,F
NPM6I variant peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.