Sequence Similarity Clusters for the Entities in PDB 4HUL

Entity #1 | Chains: A
Multidrug efflux protein protein, length: 459 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 15854
95 % 5 5 14755 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 5 5 14468
70 % 5 5 13526
50 % 5 5 11980
40 % 5 5 10742
30 % 6 7 5757
Entity #2 | Chains: B
Protein B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 15855
95 % 5 5 14756 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 5 5 14469
70 % 52 54 674
50 % 53 55 643
40 % 68 71 424
30 % 77 148 253

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5C6P 1 A protein C 485
2 4HUM 1 A Multidrug efflux protein 485
3 4HUN 1 A Multidrug efflux protein 485
4 4HUK 1 A Multidrug efflux protein 485
5 3MKT 1 A, B Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux pump 666
6 4HUL 1 A Multidrug efflux protein 485
7 3MKU 1 A, B Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux pump 666