Sequence Similarity Clusters for the Entities in PDB 4HUL

Entity #1 | Chains: A
Multidrug efflux protein protein, length: 459 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16248
95 % 5 5 15131 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 5 5 14827
70 % 5 5 13818
50 % 5 5 12214
40 % 5 5 10949
30 % 6 7 5861
Entity #2 | Chains: B
Protein B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16249
95 % 5 5 15132 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 5 5 14828
70 % 52 54 702
50 % 53 55 671
40 % 69 73 428
30 % 78 150 259

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5C6P 1 A protein C 485
2 4HUM 1 A Multidrug efflux protein 485
3 4HUN 1 A Multidrug efflux protein 485
4 4HUK 1 A Multidrug efflux protein 485
5 3MKT 1 A, B Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux pump 666
6 4HUL 1 A Multidrug efflux protein 485
7 3MKU 1 A, B Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux pump 666