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The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Sequence Clustering and Redundancy Reduction Results
4HUB
Sequence Clusters for the Sequence Entities in PDB 4HUB
Entity #1: Chains: 0 - 23S Ribosomal RNA rna, length: 2910 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 494
95% 1 47 728
90% 1 47 755
70% 1 47 794
50% 1 74 489
40% 1 78 480
30% 1 78 497
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 42 577
95% 1 42 830
90% 1 42 855
70% 1 42 888
50% 1 43 920
40% 1 43 946
30% 1 55 727
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 275
95% 1 74 394
90% 1 74 418
70% 1 74 442
50% 1 74 491
40% 2 77 492
30% 2 78 498
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 44 545
95% 1 68 446
90% 1 68 468
70% 1 68 498
50% 1 105 318
40% 1 105 341
30% 2 402 54
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 274
95% 1 74 393
90% 1 74 417
70% 1 74 441
50% 1 74 490
40% 1 74 521
30% 1 394 61
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 23 1368
95% 1 47 726
90% 1 47 753
70% 1 68 491
50% 1 103 328
40% 1 103 350
30% 1 103 361
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 272
95% 1 74 391
90% 1 74 415
70% 1 74 439
50% 1 76 472
40% 1 76 501
30% 1 78 495
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 310
95% 1 68 448
90% 1 68 471
70% 1 68 501
50% 1 70 526
40% 1 70 554
30% 1 70 559
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 497
95% 1 68 444
90% 1 68 466
70% 1 68 496
50% 1 68 551
40% 1 70 553
30% 1 71 545
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 312
95% 1 68 449
90% 1 68 472
70% 1 68 502
50% 1 70 528
40% 1 70 557
30% 1 71 547
Entity #2: Chains: 9 - 5S Ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 67 323
95% 1 68 442
90% 1 68 464
70% 1 68 494
50% 1 68 548
40% 1 68 580
30% 1 106 348
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 279
95% 1 74 396
90% 1 74 420
70% 1 74 444
50% 1 76 473
40% 1 78 483
30% 1 369 73
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 278
95% 1 74 395
90% 1 74 419
70% 1 74 443
50% 1 112 286
40% 1 112 310
30% 1 112 326
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 70 299
95% 1 70 426
90% 1 70 446
70% 1 70 474
50% 1 70 529
40% 1 70 558
30% 1 70 560
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 280
95% 1 74 397
90% 1 74 421
70% 1 74 445
50% 1 74 492
40% 1 74 523
30% 1 74 525
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 308
95% 1 68 443
90% 1 68 465
70% 1 68 495
50% 1 68 549
40% 1 70 552
30% 1 71 544
Entity #26: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 314
95% 1 68 451
90% 1 68 474
70% 1 68 504
50% 1 68 554
40% 1 68 584
30% 1 68 581
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 63 343
95% 1 63 492
90% 1 63 515
70% 1 63 550
50% 1 63 599
40% 1 63 626
30% 1 63 629
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21795
95% 1 23 1862
90% 1 23 1896
70% 1 23 1924
50% 1 23 1972
40% 1 23 1996
30% 1 81 472
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 316
95% 1 68 453
90% 1 68 476
70% 1 68 506
50% 1 69 541
40% 1 69 572
30% 1 69 572
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 46 508
95% 1 67 458
90% 1 67 481
70% 1 67 513
50% 1 102 330
40% 1 104 344
30% 1 104 355
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 501
95% 1 68 454
90% 1 68 477
70% 1 68 507
50% 1 105 321
40% 1 105 343
30% 1 105 354
Entity #31: Chains: 3 - 50S ribosomal protein L44e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 313
95% 1 68 450
90% 1 68 473
70% 1 68 503
50% 1 68 553
40% 1 68 583
30% 1 104 358
Entity #32: Chains: 4,5 - 50S ribosomal protein L12 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 67 320
95% 1 74 386
90% 1 74 411
70% 1 74 436
50% 1 74 485
40% 1 109 318
30% 1 109 332
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 23 1364
95% 1 74 389
90% 1 74 413
70% 1 74 438
50% 1 74 487
40% 1 76 500
30% 1 77 502
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 273
95% 1 74 392
90% 1 74 416
70% 1 74 440
50% 1 74 488
40% 1 109 320
30% 1 109 335
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 307
95% 1 68 441
90% 1 68 463
70% 1 68 493
50% 1 68 547
40% 1 104 346
30% 1 397 60
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 499
95% 1 47 736
90% 1 68 470
70% 1 68 500
50% 9 97 279
40% 13 106 271
30% 13 108 290
Entity #9: Chains: G - 50S ribosomal protein L10E protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43508
95% 1 1 31000
90% 1 1 29806
70% 1 1 26842
50% 1 1 23170
40% 1 1 20538
30% 1 1 17498
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.