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The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Sequence Clustering and Redundancy Reduction Results
4HUB
Sequence Clusters for the Sequence Entities in PDB 4HUB
Entity #1: Chains: 0 - 23S Ribosomal RNA rna, length: 2910 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 500
95% 1 47 738
90% 1 47 767
70% 1 47 810
50% 1 74 495
40% 1 78 488
30% 1 78 504
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 42 600
95% 1 42 858
90% 1 42 883
70% 1 42 927
50% 1 43 975
40% 1 43 1009
30% 1 55 755
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 281
95% 1 74 398
90% 1 74 424
70% 1 74 450
50% 1 74 497
40% 2 77 501
30% 2 78 505
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 44 561
95% 1 68 454
90% 1 68 478
70% 1 68 510
50% 1 132 246
40% 1 132 272
30% 2 443 48
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 280
95% 1 74 397
90% 1 74 423
70% 1 74 449
50% 1 74 496
40% 1 74 529
30% 1 435 53
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 23 1455
95% 1 47 736
90% 1 47 765
70% 1 68 502
50% 1 130 253
40% 1 130 279
30% 1 130 304
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 278
95% 1 74 395
90% 1 74 421
70% 1 74 447
50% 1 76 479
40% 1 76 510
30% 1 78 502
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 318
95% 1 68 456
90% 1 68 481
70% 1 68 513
50% 1 70 535
40% 1 70 563
30% 1 70 567
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 502
95% 1 68 452
90% 1 68 476
70% 1 68 508
50% 1 68 558
40% 1 70 562
30% 1 71 552
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 321
95% 1 68 458
90% 1 68 483
70% 1 68 515
50% 1 70 537
40% 1 70 566
30% 1 71 554
Entity #2: Chains: 9 - 5S Ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 67 331
95% 1 68 450
90% 1 68 474
70% 1 68 506
50% 1 68 555
40% 1 68 588
30% 1 133 293
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 285
95% 1 74 400
90% 1 74 426
70% 1 74 452
50% 1 76 480
40% 1 78 492
30% 1 383 70
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 284
95% 1 74 399
90% 1 74 425
70% 1 74 451
50% 1 139 232
40% 1 139 258
30% 1 139 272
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 70 305
95% 1 70 434
90% 1 70 455
70% 1 70 485
50% 1 70 539
40% 1 70 568
30% 1 70 569
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 286
95% 1 74 401
90% 1 74 427
70% 1 74 453
50% 1 74 498
40% 1 74 530
30% 1 74 531
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 316
95% 1 68 451
90% 1 68 475
70% 1 68 507
50% 1 68 556
40% 1 70 561
30% 1 71 551
Entity #26: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 323
95% 1 68 460
90% 1 68 485
70% 1 68 517
50% 1 68 562
40% 1 68 593
30% 1 68 589
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 63 348
95% 1 63 506
90% 1 63 529
70% 1 63 565
50% 1 63 611
40% 1 63 639
30% 1 63 642
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22104
95% 1 23 1953
90% 1 23 1984
70% 1 23 2000
50% 1 23 2018
40% 1 23 2036
30% 1 108 353
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 325
95% 1 68 462
90% 1 68 487
70% 1 68 519
50% 1 69 550
40% 1 69 582
30% 1 69 582
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 46 514
95% 1 67 467
90% 1 67 492
70% 1 67 526
50% 1 123 264
40% 1 125 294
30% 1 125 311
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 507
95% 1 68 463
90% 1 68 488
70% 1 68 520
50% 1 132 247
40% 1 132 273
30% 1 132 297
Entity #31: Chains: 3 - 50S ribosomal protein L44e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 322
95% 1 68 459
90% 1 68 484
70% 1 68 516
50% 1 68 561
40% 1 68 592
30% 1 131 301
Entity #32: Chains: 4,5 - 50S ribosomal protein L12 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 67 328
95% 1 74 390
90% 1 74 417
70% 1 74 444
50% 1 74 491
40% 1 130 278
30% 1 130 302
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 23 1450
95% 1 74 393
90% 1 74 419
70% 1 74 446
50% 1 74 493
40% 1 76 509
30% 1 77 508
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 279
95% 1 74 396
90% 1 74 422
70% 1 74 448
50% 1 74 494
40% 1 136 265
30% 1 136 287
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 315
95% 1 68 449
90% 1 68 473
70% 1 68 505
50% 1 68 554
40% 1 125 295
30% 1 432 55
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 504
95% 1 47 744
90% 1 68 480
70% 1 68 512
50% 9 97 289
40% 13 106 280
30% 13 108 296
Entity #9: Chains: G - 50S ribosomal protein L10E protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44171
95% 1 1 31472
90% 1 1 30269
70% 1 1 27240
50% 1 1 23499
40% 1 1 20826
30% 1 1 17735
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.