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An Information Portal to 105212 Biological Macromolecular Structures

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Sequence Clustering and Redundancy Reduction Results
4HUB
Sequence Clusters for the Sequence Entities in PDB 4HUB
Entity #1: Chains: 0 - 23S Ribosomal RNA rna, length: 2910 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 529
95% 1 47 778
90% 1 47 810
70% 1 47 853
50% 1 74 497
40% 1 78 493
30% 1 78 508
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 42 661
95% 1 42 919
90% 1 42 940
70% 1 42 975
50% 1 43 996
40% 1 43 1026
30% 1 55 790
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 284
95% 1 74 402
90% 1 74 427
70% 1 74 454
50% 1 74 499
40% 2 77 504
30% 2 78 509
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 44 618
95% 1 68 457
90% 1 68 481
70% 1 68 516
50% 1 139 234
40% 1 139 262
30% 2 454 46
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 283
95% 1 74 401
90% 1 74 426
70% 1 74 453
50% 1 74 498
40% 1 74 535
30% 1 446 54
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 23 1471
95% 1 47 776
90% 1 47 808
70% 1 68 509
50% 1 137 238
40% 1 137 272
30% 1 137 292
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 281
95% 1 74 399
90% 1 74 424
70% 1 74 451
50% 1 76 480
40% 1 76 514
30% 1 78 506
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 319
95% 1 68 459
90% 1 68 484
70% 1 68 519
50% 1 70 544
40% 1 70 578
30% 1 70 578
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 532
95% 1 68 455
90% 1 68 479
70% 1 68 514
50% 1 68 573
40% 1 70 577
30% 1 71 559
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 322
95% 1 68 461
90% 1 68 486
70% 1 68 521
50% 1 70 546
40% 1 70 581
30% 1 71 562
Entity #2: Chains: 9 - 5S Ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 67 332
95% 1 68 452
90% 1 68 477
70% 1 68 512
50% 1 68 570
40% 1 68 609
30% 1 140 277
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 287
95% 1 74 404
90% 1 74 429
70% 1 74 457
50% 1 76 482
40% 1 78 496
30% 1 387 69
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 286
95% 1 74 403
90% 1 74 428
70% 1 74 456
50% 1 146 216
40% 1 146 245
30% 1 146 263
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 70 307
95% 1 70 438
90% 1 70 460
70% 1 70 494
50% 1 70 548
40% 1 70 583
30% 1 70 580
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 288
95% 1 74 405
90% 1 74 430
70% 1 74 458
50% 1 74 502
40% 1 74 538
30% 1 74 539
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 317
95% 1 68 453
90% 1 68 478
70% 1 68 513
50% 1 68 571
40% 1 70 576
30% 1 71 558
Entity #26: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 324
95% 1 68 463
90% 1 68 488
70% 1 68 523
50% 1 68 578
40% 1 68 616
30% 1 68 608
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 63 348
95% 1 63 508
90% 1 63 532
70% 1 63 572
50% 1 63 649
40% 1 63 675
30% 1 63 675
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22280
95% 1 23 1976
90% 1 23 2008
70% 1 23 2022
50% 1 23 2036
40% 1 23 2056
30% 1 115 333
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 326
95% 1 68 465
90% 1 68 490
70% 1 68 525
50% 1 69 561
40% 1 69 601
30% 1 69 597
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 46 549
95% 1 67 469
90% 1 67 494
70% 1 67 532
50% 1 136 242
40% 1 138 265
30% 1 138 285
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 542
95% 1 68 466
90% 1 68 491
70% 1 68 526
50% 1 139 236
40% 1 139 264
30% 1 139 280
Entity #31: Chains: 3 - 50S ribosomal protein L44e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 323
95% 1 68 462
90% 1 68 487
70% 1 68 522
50% 1 68 577
40% 1 68 615
30% 1 138 287
Entity #32: Chains: 4,5 - 50S ribosomal protein L12 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 67 329
95% 1 74 394
90% 1 74 420
70% 1 74 448
50% 1 74 493
40% 1 143 251
30% 1 143 266
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 23 1464
95% 1 74 397
90% 1 74 422
70% 1 74 450
50% 1 74 495
40% 1 76 513
30% 1 77 512
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 74 282
95% 1 74 400
90% 1 74 425
70% 1 74 452
50% 1 74 496
40% 1 143 252
30% 1 143 268
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 68 316
95% 1 68 451
90% 1 68 476
70% 1 68 511
50% 1 68 568
40% 1 138 266
30% 1 449 51
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 47 538
95% 1 47 785
90% 1 68 483
70% 1 68 518
50% 9 97 296
40% 13 106 285
30% 13 108 303
Entity #9: Chains: G - 50S ribosomal protein L10E protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44580
95% 1 1 31755
90% 1 1 30522
70% 1 1 27441
50% 1 1 23666
40% 1 1 20981
30% 1 1 17879
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.