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Crystal structure of DdrB from Deinococcus radiodurans bound to ssDNA
Sequence Clustering and Redundancy Reduction Results
4HQB
Cluster # 5748 Members. Sequence cutoff: 90% Cluster size: 2 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4NOE 1 A, B, C, D, E Single-stranded DNA-binding protein DdrB UNP residues 1-144 1299  
2 4HQB 1 A, B, C, D, E Single-stranded DNA-binding protein DdrB 1299  
 
Sequence Clusters for the Sequence Entities in PDB 4HQB
Entity #1: Chains: A,B,C,D,E - Single-stranded DNA-binding protein DdrB protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 5171
95% 2 2 5760
90% 2 2 5748
70% 2 2 5622
50% 2 2 5255
40% 2 2 4914
30% 2 2 4432
Entity #2: Chains: M - 5'-D(*TP*TP*TP*T)-3' dna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: N - 5'-D(P*TP*TP*TP*TP*T)-3' dna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.