Sequence Similarity Clusters for the Entities in PDB 4HQB

Entity #1 | Chains: A,B,C,D,E
Single-stranded DNA-binding protein DdrB protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6688
95 % 2 2 7263 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.8
PDBFlex
90 % 2 2 7223
70 % 2 2 7035
50 % 2 2 6495
40 % 2 2 6054
30 % 2 2 5418
Entity #2 | Chains: M
5'-D(*TP*TP*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
5'-D(P*TP*TP*TP*TP*T)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4NOE 1 A, B, C, D, E Single-stranded DNA-binding protein DdrB UNP residues 1-144 1299
2 4HQB 1 A, B, C, D, E Single-stranded DNA-binding protein DdrB 1299