Sequence Similarity Clusters for the Entities in PDB 4HQB

Entity #1 | Chains: A,B,C,D,E
Single-stranded DNA-binding protein DdrB protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6895
95 % 2 2 7485 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.8
PDBFlex
90 % 2 2 7448
70 % 2 2 7239
50 % 2 2 6685
40 % 2 2 6227
30 % 2 2 5582
Entity #2 | Chains: M
5'-D(*TP*TP*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
5'-D(P*TP*TP*TP*TP*T)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures