Sequence Similarity Clusters for the Entities in PDB 4HQB

Entity #1 | Chains: A,B,C,D,E
Single-stranded DNA-binding protein DdrB protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6865
95 % 2 2 7001 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.8
PDBFlex
90 % 2 2 6960
70 % 2 2 6776
50 % 2 2 6285
40 % 2 2 5830
30 % 2 2 5125
Entity #2 | Chains: M
5'-D(*TP*TP*TP*T)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
5'-D(P*TP*TP*TP*TP*T)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures