Sequence Similarity Clusters for the Entities in PDB 4HPY

Entity #1 | Chains: H
CH59 Fab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60840
95 % 1 2 23412 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 2 249 37
70 % 30 2366 2
50 % 60 4892 1
40 % 60 4892 1
30 % 71 5759 1
Entity #2 | Chains: L
CH59 Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61795
95 % 1 2 23604 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.9
PDBFlex
90 % 1 64 350
70 % 30 2416 1
50 % 61 4892 1
40 % 61 4892 1
30 % 72 5759 1
Entity #3 | Chains: P
Envelope glycoprotein gp160 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures