Sequence Similarity Clusters for the Entities in PDB 4HPO

Entity #1 | Chains: H
CH58 Fab heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39940
95 % 3 13 3400 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 3.7
PDBFlex
90 % 5 34 1193
70 % 168 2475 2
50 % 346 5101 1
40 % 438 5750 1
30 % 524 7168 1
Entity #2 | Chains: L
CH58 Fab light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 15520
95 % 1 5 12627 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.5
PDBFlex
90 % 1 11 3592
70 % 166 2516 1
50 % 347 5101 1
40 % 439 5750 1
30 % 525 7168 1
Entity #3 | Chains: P
Envelope glycoprotein gp160 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures