Sequence Similarity Clusters for the Entities in PDB 4HPO

Entity #1 | Chains: H
CH58 Fab heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40087
95 % 1 4 14524 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 3.7
PDBFlex
90 % 5 31 1379
70 % 158 2342 2
50 % 325 4843 1
40 % 325 4843 1
30 % 345 5705 1
Entity #2 | Chains: L
CH58 Fab light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41289
95 % 1 5 12596 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.5
PDBFlex
90 % 1 11 3659
70 % 156 2392 1
50 % 326 4843 1
40 % 326 4843 1
30 % 346 5705 1
Entity #3 | Chains: P
Envelope glycoprotein gp160 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures