Sequence Similarity Clusters for the Entities in PDB 4HPO

Entity #1 | Chains: H
CH58 Fab heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38620
95 % 1 4 13980 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 4.0
PDBFlex
90 % 4 28 1603
70 % 148 2222 2
50 % 303 4587 1
40 % 303 4587 1
30 % 323 5392 1
Entity #2 | Chains: L
CH58 Fab light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39777
95 % 1 5 12134 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.5
PDBFlex
90 % 1 11 3526
70 % 145 2264 1
50 % 304 4587 1
40 % 304 4587 1
30 % 324 5392 1
Entity #3 | Chains: P
Envelope glycoprotein gp160 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.