Sequence Similarity Clusters for the Entities in PDB 4HLQ

Entity #1 | Chains: A,C,E,G,I
TBC1 domain family member 20 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16002
95 % 2 2 14928 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 2 14630
70 % 2 2 13645
50 % 2 2 12072
40 % 2 2 10823
30 % 2 2 9218
Entity #2 | Chains: B,D,F,H,J
Ras-related protein Rab-1B protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5803
95 % 14 17 1611 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.5
PDBFlex
90 % 16 19 1553
70 % 18 21 1485
50 % 83 97 276
40 % 515 569 19
30 % 809 928 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2WWX 1 A RAS-RELATED PROTEIN RAB-1 GTPASE DOMAIN, RESIDUES 4-178 9606
2 3NKV 1 A, B Ras-related protein Rab-1B Rab1b-AMP 9606
3 3SFV 1 A Ras-related protein Rab-1A residues 1-176 9606
4 3JZA 1 A Ras-related protein Rab-1B UNP residues 3-174 9606
5 2RHD 1 A Small GTP binding protein rab1a Residues 1-174 5807
6 1YZN 1 A GTP-binding protein YPT1 4932
7 3TKL 1 A Ras-related protein Rab-1A UNP residues 1-191 9606
8 5SZH 2 B Ras-related protein Rab-1B 9606
9 2FOL 1 A Ras-related protein Rab-1A 9606
10 5O74 2 B, D, F, H, J, L Ras-related protein Rab-1B 9606
11 4I1O 1 A, C, E, G Ras-related protein Rab-1B UNP residues 3-174 9606
12 5SZK 2 B Ras-related protein Rab-1B 9606
13 4JVS 2 B Ras-related protein Rab-1A UNP residues 1-177 9606
14 4FMC 2 B, D Ras-related protein Rab-1A 9606
15 3L0I 2 B, D Ras-related protein Rab-1A small GTPase domain, residues 1-177 9606
16 4FMD 2 B, D Ras-related protein Rab-1A 9606
17 4FMD 3 F Ras-related protein Rab-1A 9606
18 4HLQ 2 B, D, F, H, J Ras-related protein Rab-1B 9606
19 4FMB 2 B, D, F Ras-related protein Rab-1A 9606
20 4IRU 2 B, D, F Ras-related protein Rab-1A 9606 3.6.5.2 | Details
21 4FME 2 B, E Ras-related protein Rab-1A 9606