Sequence Similarity Clusters for the Entities in PDB 4HLQ

Entity #1 | Chains: A,C,E,G,I
TBC1 domain family member 20 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16033
95 % 2 2 14957 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 2 14657
70 % 2 2 13670
50 % 2 2 12098
40 % 2 2 10844
30 % 2 2 9228
Entity #2 | Chains: B,D,F,H,J
Ras-related protein Rab-1B protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5816
95 % 14 17 1614 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.5
PDBFlex
90 % 16 19 1554
70 % 18 21 1486
50 % 83 97 281
40 % 515 569 19
30 % 823 942 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NKV 1 A, B Ras-related protein Rab-1B Rab1b-AMP 9606
2 3JZA 1 A Ras-related protein Rab-1B UNP residues 3-174 9606
3 4I1O 1 A, C, E, G Ras-related protein Rab-1B UNP residues 3-174 9606
4 4HLQ 2 B, D, F, H, J Ras-related protein Rab-1B 9606